PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G149900.1.p
Common NameGLYMA_09G149900, LOC100795953
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 216aa    MW: 24542 Da    PI: 8.1168
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G149900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-123483455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                         +h+e Er+RR+++ +  ++Lr+llP       ++K s ++ + +A++YI++Lq
  Glyma.09G149900.1.p 34 MHKETERQRRQEMGKLCATLRSLLPLeY---IKGKRSTSDYVNEAMNYINHLQ 83
                         7*************************77...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.52E-112887No hitNo description
SuperFamilySSF474591.22E-152998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.4593082IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-113298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-103483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-53688IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MIFVQVKGQG KSSKHLHVEE KEDFIAMDEN KKWMHKETER QRRQEMGKLC ATLRSLLPLE  60
YIKGKRSTSD YVNEAMNYIN HLQNKVKQLQ AKRDELVKVS NLKSNICSEN ESSSSSTTHL  120
PPLVSVHPFP GGLEIMCGYS FGKSVFPMSR VLDILLKEGI NVVSTTSIRR DGRFIHTIRS  180
EDPNHLNMTG ADYSELQIKL TEAISLQETL PEHEN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.201520.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G149900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0927390.0BT092739.1 Soybean clone JCVI-FLGm-11L13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534028.11e-160transcription factor bHLH118 isoform X1
RefseqXP_028180241.11e-160transcription factor bHLH118-like isoform X1
TrEMBLI1L3H11e-159I1L3H1_SOYBN; Uncharacterized protein
STRINGGLYMA09G27610.11e-160(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Representative plantOGRP1638838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.15e-31bHLH family protein