PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G147200.1.p
Common NameGLYMA_09G147200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 328aa    MW: 37111.1 Da    PI: 8.7841
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G147200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.7e-17156206155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + y+GVr++  + +Wv+e+r+p   +k++r++lg+f t+e+Aa+a++ a+ +l+g
  Glyma.09G147200.1.p 156 PVYRGVRRRN-SDKWVCEVREP---NKKTRIWLGTFPTPEMAARAHDVAAMALRG 206
                          68*****888.8******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-13156206IPR001471AP2/ERF domain
SMARTSM003803.4E-27157220IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-21157216IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.1E-31157216IPR001471AP2/ERF domain
PROSITE profilePS5103221.667157214IPR001471AP2/ERF domain
PRINTSPR003671.3E-7158169IPR001471AP2/ERF domain
CDDcd000181.16E-29158216No hitNo description
PRINTSPR003671.3E-7180196IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MLPSLPFIYY IYPSLTLSLF SSSTKTTQHS NSISIITKKK EKRISNTLFI IKTLSSLFPY  60
QNPFPQHYSL QYKKPFFNLV STAHTHTHIY IYSMFTLNHS SDLYHVSPEL SSSLDTSSPA  120
SEGSRGVAFS DEEVRLAVRH PKKRAGRKKF RETRHPVYRG VRRRNSDKWV CEVREPNKKT  180
RIWLGTFPTP EMAARAHDVA AMALRGRYAC LNFADSAWRL PVPATAEAKD IQKAAAEAAQ  240
AFRPDQTLKN ANTRQECVEA VAVAVAETTT ATAQGVFYME EEEQVLDMPE LLRNMVLMSP  300
THCLGYEYED ADLDAQDAEV SLWNFSI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.194000.0flower| hypocotyl| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G147200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353840.0AC235384.1 Glycine max strain Williams 82 clone GM_WBb0112F14, complete sequence.
GenBankEU3653760.0EU365376.1 Glycine max cultivar Stout CRT binding factor 1 and PERLD1 genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235507.11e-175CRT binding factor 1
RefseqXP_028179841.11e-175dehydration-responsive element-binding protein 1D-like
SwissprotQ9FJ938e-68DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLK7LDZ80.0K7LDZ8_SOYBN; Uncharacterized protein
STRINGGLYMA09G27180.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-49C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]