PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G102900.1.p
Common NameGLYMA_09G102900, LOC100813725
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 729aa    MW: 78389.8 Da    PI: 6.2686
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G102900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07302322526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C++f++ G C++Gd C +aHg
  Glyma.09G102900.1.p 302 PCPDFRK-GACRRGDMCEYAHG 322
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.8E-1930164IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.2E-1833163IPR020683Ankyrin repeat-containing domain
CDDcd002041.92E-1636162No hitNo description
SMARTSM0024822003767IPR002110Ankyrin repeat
PfamPF127968.7E-1080151IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.54984106IPR002110Ankyrin repeat
SMARTSM002480.1684114IPR002110Ankyrin repeat
PROSITE profilePS5029717.71484191IPR020683Ankyrin repeat-containing domain
PRINTSPR014159.4E-585100IPR002110Ankyrin repeat
PROSITE profilePS5008812.182119154IPR002110Ankyrin repeat
SMARTSM002482.7E-4119151IPR002110Ankyrin repeat
PRINTSPR014159.4E-5138152IPR002110Ankyrin repeat
SMARTSM003564.0E-6297323IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-5302322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4302324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582302324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4330360IPR000571Zinc finger, CCCH-type
SMARTSM0035635332355IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MCGGPEKSKS LSTSSSSAVE GSSNSKDMKN LTVHTEDSFS CLLELASNND FEDLKLALDR  60
DASLINEVGL WYVRQIGSKQ IVLQPRTPLM VAAMYGSIDV LKLLLSCPEA DVNFSCGTDK  120
STALHCAALG GSVNAVDVVK LLLSAGADVS CVDANGNRPV DVLVVPPKLE GLKATLEDLL  180
SDSTSVGSVG DCFIPVSVNS SCSDSAAHLS SPENGLPFSA MASKFADTAV NSASEKKEYP  240
IDPSLPDIKN SIYATDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC  300
VPCPDFRKGA CRRGDMCEYA HGVFECWLHP AQYRTRLCKD GTSCNRRVCF FAHTAEELRP  360
LYVSTGSAVP SPRSSASTPN VMDMAAAMSL FPGSPSSISS MSPSPFAQPM SPSTSGISHS  420
SNAWPQPNVP ALHLPGSNIQ TSRLRSSLSA RDMPPEDFDV LQDFDGQQHL LSDLGCFSQP  480
RPGAISVSRS GRSKTLTPSN LDELFSAEIS SSPRYSDPAV ASVFSPRHKS TIMNQFQQLQ  540
SSLSPINTSV SSPRNVEHPL LQASFGVSSP GRMSPRSMEP ISPMSSRLSA FAQREKQHQQ  600
LRSLSSRDLG ANVPASMVGS PVNSWSNWGS PHGNGKVDWS VNGNELGRLQ RSSSFELGNN  660
GEEPDLSWVQ SLVKESPSEI KEKLTGSGPV ASVDGPSSNP KSNPQVESVD HSVLGAWLEQ  720
MQLDQLVV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.253420.0cotyledon| flower| hypocotyl| leaf| root| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G102900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352810.0AC235281.1 Glycine max strain Williams 82 clone GM_WBb0050D02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006587172.10.0zinc finger CCCH domain-containing protein 30 isoform X1
RefseqXP_028180927.10.0zinc finger CCCH domain-containing protein 30-like isoform X1
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A0B2NTX80.0A0A0B2NTX8_GLYSO; Zinc finger CCCH domain-containing protein 30
TrEMBLI1L2G50.0I1L2G5_SOYBN; Uncharacterized protein
STRINGGLYMA09G15600.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]