PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G072200.1.p
Common NameGLYMA_09G072200, LOC100804628
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 1126aa    MW: 125841 Da    PI: 6.4356
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G072200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.61e-22126227199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F 
  Glyma.09G072200.1.p 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI 213
                          99*****************************954.4444.48************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++++++l++++ r+
  Glyma.09G072200.1.p 214 --RDEKQQLLLGIKRA 227
                          ..55788889988775 PP
2Auxin_resp121.85.2e-40252334183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaas++s+F+++YnPras+seFv++++k++kal ++vs+GmRf+m+fete+s  rr++Gt++g++dldpvrW+nS+Wr+L+
  Glyma.09G072200.1.p 252 AAHAASNNSPFTIFYNPRASPSEFVIPLAKYNKALFNQVSLGMRFRMMFETEESGVRRYMGTITGITDLDPVRWKNSQWRNLQ 334
                          79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-44116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-41118241IPR015300DNA-binding pseudobarrel domain
CDDcd100178.85E-20125217No hitNo description
SMARTSM010191.7E-23126228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.182126228IPR003340B3 DNA binding domain
PfamPF023624.8E-21126227IPR003340B3 DNA binding domain
PfamPF065074.6E-35252334IPR010525Auxin response factor
PfamPF023096.8E-109951085IPR033389AUX/IAA domain
PROSITE profilePS5174524.6559981091IPR000270PB1 domain
SuperFamilySSF542771.5E-810121076No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1126 aa     Download sequence    Send to blast
MKAPPNGYLP NSGEGERKTI NSELWHACAG PLVSLPPVGS VVVYFPQGHS EQVAASMQKE  60
ADFIPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VNKYDKEALL ASDMGLKQNQ  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDNTWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKQQL LLGIKRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAASNNS PFTIFYNPRA SPSEFVIPLA KYNKALFNQV SLGMRFRMMF  300
ETEESGVRRY MGTITGITDL DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP  360
FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWLGDD LGMKDASSSV FPGFSLMQWM  420
SMQQNNQFSA AQSGFIPPSM LSSNALHGNL TTDDPSKLLS FQAPVLSSPN LQFNKPNLAN  480
QVNQLQQSPT SWSPQQQQQQ QQQKLQSMLQ TPLNPLQQQR QQQLPVPQNL PQPQQQQPQM  540
PQQRAQQPQE QQQQSCQQTI MNNGAVASNQ IPNQCVQQPV SYSQLQQQQL ISGSIPPQQC  600
FPSPNKNTLL MTSLPQDSQF QQQIDQQASL LQRQQLQQQQ QQTQLQSSPL QLLQQSLSQR  660
APQQPQMTQM SQQNSSDQQP QLQMLQKLQQ QQQQQQQQQQ QKPLSTSSPL LQSQLLQQQN  720
THQQNQQFPQ LPLSQGHQPQ QLGNNAFSME KLLNGNNYSS SSLMQTQQLS VNQPHNTQKS  780
LTNTRAPSTL TDGDAPSCST SPSTNNCQIS PNLMKRNQQV SATLGGPSVV EPTNHLMQEL  840
HSKSEMQIKH ELPSVRGTDQ LKFKGTVADQ MEASSGTSYC IDPNNIHQNF PLPNFCMDGD  900
VQSHPRNNLP FASNLDGLTP DTLLSRGYDS QKDFQNLLSN YGGAPRDIET ELSTAALSPQ  960
PFGVPDMPFK PGCSSDIAIN DPGVLNNGLW ANQTQRMRTY TKVQKCGSVG RCIDVTRYKG  1020
YDELRHDLAR MFGIEGQLED PQRTEWKLVY VDHENDILLV GDDPWEEFVS CVQSIKILSS  1080
SEVQQMSLDG DLGHVPVPNQ ACSGTDNGNA WRGQYDDNSA ASFNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1711535545388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.90820.0hypocotyl| root| seed coat| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G072200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533798.10.0auxin response factor 19
TrEMBLI1L1T20.0I1L1T2_SOYBN; Auxin response factor
STRINGGLYMA09G08350.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49183352
Representative plantOGRP9033914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19