PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G068400.5.p | ||||||||
Common Name | GLYMA_09G068400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YA | ||||||||
Protein Properties | Length: 181aa MW: 19841.3 Da PI: 10.6439 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 105.4 | 4.7e-33 | 22 | 78 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq+Rakle+++kl +k+rkpylheSRh+hAl+R RgsgGrF Glyma.09G068400.5.p 22 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-IKNRKPYLHESRHRHALNRVRGSGGRF 78 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 7.7E-37 | 20 | 81 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.224 | 21 | 81 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.1E-25 | 24 | 46 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.7E-28 | 24 | 78 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 26 | 46 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 7.1E-25 | 55 | 78 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MIPPMLGLAS TRVALPLDLA EDGPIYVNAK QYHGILRRRQ SRAKLEAQNK LIKNRKPYLH 60 ESRHRHALNR VRGSGGRFLS TKQLAQSNAE FVTGAHSGSD PTNRYQKEHL SEVESHSSKD 120 GDNSSFITTC SDRPCLSGNN VNFRQQECMF LGNSANMGGS PQFSGGLTFG GAKQRTSVVR 180 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 8e-24 | 22 | 83 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G068400.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT099370 | 0.0 | BT099370.1 Soybean clone JCVI-FLGm-13B20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014617459.1 | 1e-132 | nuclear transcription factor Y subunit A-9 isoform X1 | ||||
Refseq | XP_028248029.1 | 1e-132 | nuclear transcription factor Y subunit A-3-like isoform X2 | ||||
TrEMBL | A0A445IXU8 | 1e-131 | A0A445IXU8_GLYSO; Nuclear transcription factor Y subunit A-3 isoform D | ||||
TrEMBL | I1L1N7 | 1e-131 | I1L1N7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G07960.4 | 1e-131 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 2e-38 | nuclear factor Y, subunit A5 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G068400.5.p |