PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G052900.1.p
Common NameGLYMA_09G052900, LOC100500521
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 123aa    MW: 14123.8 Da    PI: 5.0929
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G052900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.3e-181162256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56
                         +y+GVr ++ +g++ AeIrdp++      r +lg+f+taeeAa+a+++a+ +l+g+
  Glyma.09G052900.1.p 11 KYRGVRKRP-WGKFGAEIRDPTKpT---GRQWLGTFDTAEEAARAYDRAAIALRGA 62
                         8********.**********97744...688**********************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.8E-301170IPR001471AP2/ERF domain
PROSITE profilePS5103223.4991169IPR001471AP2/ERF domain
CDDcd000181.48E-301170No hitNo description
SuperFamilySSF541712.16E-221171IPR016177DNA-binding domain
PfamPF008471.0E-111161IPR001471AP2/ERF domain
SMARTSM003808.9E-331175IPR001471AP2/ERF domain
PRINTSPR003676.8E-111223IPR001471AP2/ERF domain
PRINTSPR003676.8E-113551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MEKERGEEEV KYRGVRKRPW GKFGAEIRDP TKPTGRQWLG TFDTAEEAAR AYDRAAIALR  60
GALAILNFPH EFHFHLPFIL SNSSTKGNGS SFDKEVIELE YLDDKVLEEL LELEEKRRNN  120
ED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-3061069114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.366120.0epicotyl
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G052900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0914580.0BT091458.1 Soybean clone JCVI-FLGm-8C21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235553.18e-85DNA-binding domain-containing protein
SwissprotQ9LTC58e-37ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLC6T2022e-83C6T202_SOYBN; Uncharacterized protein
STRINGGLYMA09G05850.13e-84(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.13e-16ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]