PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G348300.4.p | ||||||||
Common Name | GLYMA_08G348300, LOC100306701 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 229aa MW: 25908.1 Da PI: 9.4891 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.5 | 2.4e-11 | 109 | 150 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ g+ eeAa ++++a+ Glyma.08G348300.4.p 109 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTLGSQEEAAHLYDRAAF 150 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.54E-8 | 108 | 153 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.3E-4 | 108 | 165 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.9E-6 | 108 | 151 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-6 | 111 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MVSLRRRRLL GLCSGNSSFV TPLPLYCENL SGFENSNQQA KPKSEQPALS DDATNPDSNN 60 VVQEEPGSSN ASGSSSSKEQ LIQQITGPPI KRRKRHRRKN LHNQEQCIMR GVYFKNMKWQ 120 AAIKVDKKQI HLGTLGSQEE AAHLYDRAAF MCGREPNFEL PEEEKRDLSK FKWDEFLAMT 180 RQAITRKKHK RRLSPGPGNS HDMLPLSKDD WDTKQGVIED AEQETSVS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 192 | RKKHKRRL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.35005 | 0.0 | leaf| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G348300.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090935 | 0.0 | BT090935.1 Soybean clone JCVI-FLGm-5P23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003532270.1 | 1e-172 | ethylene-responsive transcription factor-like protein At4g13040 isoform X4 | ||||
Refseq | XP_028246369.1 | 1e-172 | ethylene-responsive transcription factor-like protein At4g13040 isoform X4 | ||||
Swissprot | Q56XP9 | 9e-44 | ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | A0A0B2PTH9 | 1e-170 | A0A0B2PTH9_GLYSO; Ethylene-responsive transcription factor-like protein | ||||
TrEMBL | I1KZ38 | 1e-170 | I1KZ38_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G46250.4 | 1e-171 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 8e-46 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G348300.4.p |
Entrez Gene | 100306701 |