PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G325800.3.p
Common NameGLYMA_08G325800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 526aa    MW: 57296.2 Da    PI: 6.1671
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G325800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.26.1e-32171228260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Glyma.08G325800.3.p 171 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 228
                          8****************************************.***************85 PP
2WRKY105.92.1e-33345403159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  Glyma.08G325800.3.p 345 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHD 403
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-27164229IPR003657WRKY domain
PROSITE profilePS5081123.835165229IPR003657WRKY domain
SuperFamilySSF1182903.14E-25167229IPR003657WRKY domain
SMARTSM007744.1E-34170228IPR003657WRKY domain
PfamPF031061.5E-24171227IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-37330405IPR003657WRKY domain
SuperFamilySSF1182901.96E-29337405IPR003657WRKY domain
PROSITE profilePS5081138.664340405IPR003657WRKY domain
SMARTSM007743.5E-39345404IPR003657WRKY domain
PfamPF031063.9E-26346403IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MLSWIENDEL CICSIVEPSP TTGSLSLLHQ TAYGSMTSAA SATFPVTTVC FNSNTVDERK  60
PSFFEFKPHS GSNMVPADFD NHASEKSTQI DSQGKAQAFD SSALVKNESA SPSNELSLSS  120
PVQMDCSGAS ARVEGDLDEL NPRSNITTGL QASQVDNRGS GLTVAAERVS DDGYNWRKYG  180
QKHVKGSEFP RSYYKCTHPN CEVKKLFERS HDGQITEIIY KGTHDHPKPQ PNRRYSAGTI  240
MSVQEDRSDK ASLTSRDDKG SNMCGQGSHL AEPDGKPELL PVATNDGDLD GLGVLSNRNN  300
DEVDDDDPFS KRRKMDVGIA DITPVVKPIR EPRVVVQTLS EVDILDDGYR WRKYGQKVVR  360
GNPNPRSYYK CTNTGCPVRK HVERASHDPK AVITTYEGKH NHDVPTARNS CHDMAGPASA  420
SGQTRVRPEE SDTISLDLGM GISPAAENTS NSQGRMMLSE FGDSQIHTSN SNFKFVHTTT  480
APGYFGVLNN NSNPYGSKEN PSDGPSLNHS AYPCPQNIGR ILMGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36160405677Probable WRKY transcription factor 4
2lex_A1e-36160405677Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.316800.0flower| hypocotyl| leaf| pod| root| seed coat| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G325800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195740.0EU019574.1 Glycine max WRKY35 (WRKY35) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028246071.10.0probable WRKY transcription factor 20 isoform X2
SwissprotQ93WV01e-165WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0R0J5Z20.0A0A0R0J5Z2_SOYBN; Uncharacterized protein
STRINGGLYMA08G43770.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-163WRKY family protein