PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G301700.6.p
Common NameGLYMA_08G301700, LOC100811885
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-other
Protein Properties Length: 492aa    MW: 55549.3 Da    PI: 7.0612
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G301700.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-193085257
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                         +kR+  t+ ql++Le++++ n+yp++e++ eLA++l+Lte+q++ WF+ rR k+kk
  Glyma.08G301700.6.p 30 KKRRLKTPAQLKALEDFYNDNKYPTEEMKSELADELELTEKQISGWFCHRRLKDKK 85
                         89****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-201585IPR009057Homeodomain-like
PROSITE profilePS5007117.2652686IPR001356Homeobox domain
SuperFamilySSF466891.15E-172689IPR009057Homeodomain-like
SMARTSM003899.8E-202890IPR001356Homeobox domain
PfamPF000465.7E-173085IPR001356Homeobox domain
CDDcd000861.43E-173086No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MHPSFSMLSL QLKVTELQSE ENKLSMEKNK KRRLKTPAQL KALEDFYNDN KYPTEEMKSE  60
LADELELTEK QISGWFCHRR LKDKKMLNDE VCANGRQDRS SGVIQDRGSG LVQDSCGSTK  120
HVHYRYLDPK EVESHGLYNH GFSAADITYG HKNHRYAEND SATDNTSSES SSSLQDRLLC  180
QGQDPYDMEP SSHVTPNGSL LPPNTKGANN MGHKPSGYLK VKGEIEHAAI TAVKKQLGKH  240
YREDGPLLSV EFDTIPPEAF ECQIADLANE AYYAANPALP NSPEVSAVKK QSSLSSRYDS  300
YFTKISSQDS QMVRGDFGSL HDSDFQYKKS HHDINQRRNF QSFTNPLPHK NSCLDFNADS  360
TGEASAYNNT KNCRKGTKHG FDGTRYDSGS NPSDHYEENN LVVNQTDSLL HGYENSNLKN  420
VQRGEYVKSK PSNSVHKSQV YLDTGERRGL NKRMAKEEKF DGDRKIKKQY RDPDEVRVLT  480
NEMTVCCRDA I*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12934KKRRLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.363640.0cotyledon| flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G301700.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006586030.10.0uncharacterized protein LOC100811885 isoform X5
TrEMBLA0A0R0IUT90.0A0A0R0IUT9_SOYBN; Uncharacterized protein
STRINGGLYMA08G41330.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.17e-70HB-other family protein