PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.08G299400.2.p

Common Name

GLYMA_08G299400, LOC102664835

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

TCP

Protein Properties

Length: 287aa MW: 31253.8 Da PI: 8.7998

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.08G299400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126	3.9e-39	40	156	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 +k+ +++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLl++a+pa++++tgt++++a+++ + s +ss+s+ ss+ Glyma.08G299400.2.p 40 KAKRPPTKDRHTKVEGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLREAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSSPsh 129 57999****************************************************************999877777777775555555 PP TCP 89 ..........................k 89 + Glyma.08G299400.2.p 130 yflnrrnnlynhnnhpfvtttpifssS 156 566665556666555566666666552 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	26.707	46	100	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.6E-38	46	149	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MEEECVHQQN VAGNKSNFPL QLLKKKDEGP PPSPPPSAAK AKRPPTKDRH TKVEGRGRRI 60 RMPAACAARV FQLTRELGHK SDGETIEWLL REAEPAVIAA TGTGTIPANF TSLNISLRSS 120 GSSLSSPSHY FLNRRNNLYN HNNHPFVTTT PIFSSSESCF KSYPSFSFAE DSKRSSFSDS 180 SFANNYYSRK RRHEVISHVG SCCSSQMCTD SVPAMMGGAD SVWAIPSVAS SSASGIPFMN 240 FASLLTGQHV GGATLSSETN FNVLATLNAY SGQQHQHRHE GEETHY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.08G299400.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006586018.1	0.0	transcription factor TCP15
Refseq	XP_006586019.1	0.0	transcription factor TCP15
Swissprot	Q9LQF0	7e-44	TCP23_ARATH; Transcription factor TCP23
TrEMBL	K7L9T0	0.0	K7L9T0_SOYBN; Uncharacterized protein
STRING	GLYMA08G41070.2	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	4e-40	TCP family protein

Link Out ? help Back to Top
Phytozome	Glyma.08G299400.2.p
Entrez Gene	102664835