PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G286000.1.p
Common NameGLYMA_08G286000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 308aa    MW: 34539.4 Da    PI: 6.6664
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G286000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.8e-06171197127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          y   +C+++ +tG C y d+CkF+H++
  Glyma.08G286000.1.p 171 YQPDICKDYKETGCCGYHDSCKFMHDQ 197
                          67789********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.22E-8169201IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-4170197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.474170198IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-4171197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-9171201IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.109.2E-12233289IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.53E-10247290No hitNo description
PfamPF139201.3E-6247289No hitNo description
PROSITE profilePS500899.111248286IPR001841Zinc finger, RING-type
CDDcd001622.07E-5248289No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034247Biological ProcesssnoRNA splicing
GO:0045292Biological ProcessmRNA cis splicing, via spliceosome
GO:0005684Cellular ComponentU2-type spliceosomal complex
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGDSDQLSKS AKNQKTEQDN EEDSNKESSL LHIQKKTLKP DNKLYFSTGS SKSSASAEPI  60
EESGKPVFQF ESSKEIQVQH GSKATATLET ETEFSKDARA IRERALKQAA GSLKGKSASS  120
EDEKLYKGIN NYKDYKAGFR REQAIASEKA GGSHGPLWAS AHIRVSARFD YQPDICKDYK  180
ETGCCGYHDS CKFMHDQGDY KSGWQMEKEW EEVEKARKMK LAAGEDADEE EGANLTDEDE  240
DGSLPFACFI CRNPFVDPVV TKCKRYFCEH CALKHHAKNK KCFVCNQPTL GIFNVAHEIR  300
RKMAEDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M1e-6084303116317RING finger protein 113A
5z58_M1e-6084303116317RING finger protein 113A
6ff4_t1e-6084303116317RING finger protein 113A
6ff7_t1e-6084303116317RING finger protein 113A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.49750.0hypocotyl| leaf| pod| root| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G286000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5877030.0KM587703.1 Glycine max clone GmC3H6 C3H zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020230309.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-141C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLI1KXE80.0I1KXE8_SOYBN; Uncharacterized protein
STRINGGLYMA08G39400.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Representative plantOGRP58961720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-131C3H family protein