PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G254400.1.p
Common NameGLYMA_08G254400, Glyma08g28220.1, LOC100500497
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 194aa    MW: 22324 Da    PI: 6.0801
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G254400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.61.7e-1582140563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          ++ rr+++NRe+ArrsR RK++ ++eL   v  L +eN++L ++l++ ++  +k+ +e+
  Glyma.08G254400.1.p  82 RKHRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLMDKLNHVSESHDKVAQEN 140
                          578**********************************************9999988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.4E-1478142IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.66880143IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.31E-1382132No hitNo description
Gene3DG3DSA:1.20.5.1703.1E-1282154No hitNo description
PfamPF001704.2E-1382139IPR004827Basic-leucine zipper domain
CDDcd147022.57E-1983134No hitNo description
PROSITE patternPS00036085100IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MQAREITGLN YLLPPDPCFN YSMVQNTIPT FQLHKLSNQF YGLQKPPPQV LADFSPPQSS  60
CISSNSTSDE ADEQQQSLIN ERKHRRMISN RESARRSRMR KQKHLDELWS QVVWLRNENH  120
QLMDKLNHVS ESHDKVAQEN VQLREEASEL RQMICDMQLH SPYHPPPLSP IDDDVSPYVK  180
SDSSITDSLD LLG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194101RRSRMRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.568780.0hypocotyl
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G254400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0914310.0BT091431.1 Soybean clone JCVI-FLGm-7P16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235209.11e-141BZIP transcription factor
RefseqXP_028245833.11e-141basic leucine zipper 43-like
SwissprotQ9FMC24e-43BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A0B2Q3691e-140A0A0B2Q369_GLYSO; Basic leucine zipper 43
TrEMBLC6T1X51e-140C6T1X5_SOYBN; BZIP transcription factor
STRINGGLYMA08G28220.11e-141(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16043399
Representative plantOGRP31041129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.15e-45basic leucine-zipper 42
Publications ? help Back to Top
  1. Liao Y, et al.
    Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis.
    Planta, 2008. 228(2): p. 225-40
    [PMID:18365246]
  2. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]
  3. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]