PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G237300.1.p
Common NameGLYMA_08G237300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 434aa    MW: 49439.6 Da    PI: 5.0372
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G237300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS84.22.2e-2615226645157
                 GRAS  45 fteALaarlarsvselykalppsetsekn.....sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLl 129
                          f+++L+ rl+   +++ +  + ++ s ++      ++++ a++l+++++P++ f+++ aN+ I++a +g++ +Hi+D+++++ lQW +L+
  Glyma.08G237300.1.p 152 FAKGLKCRLSLLPHNVIANGTLTSIS-MDvplisRENKMEAFQLLYQTTPYISFGFMGANEVIYQASQGKSSMHIVDLGMENTLQWSSLI 240
                          66666666666333333333322222.223555567788999************************************************ PP

                 GRAS 130 qaLasRpegppslRiTgvgspesgskee 157
                          +aLasRpeg p+lRiTg+  +e +   +
  Glyma.08G237300.1.p 241 RALASRPEGHPTLRITGLTGNEDN--SN 266
                          ******************986533..33 PP
2GRAS167.98.2e-52270433209373
                 GRAS 209 qlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                          ++  ll++ v+ +  + +e+L  +k+l P+ ++vveq+++hn++ Fl rfle+l+yysa+fdsle ++pr+ ++r+k+Er  +++ei+nv
  Glyma.08G237300.1.p 270 SMNVLLNKYVKESRgYLKEILLSIKKLGPTALTVVEQDTNHNGHFFLGRFLESLHYYSAIFDSLEPSMPRNRQHRMKIERLHFAEEIRNV 359
                          5556665555555557889*********************************************************************** PP

                 GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                          va eg++r+erhe++ +Wr++l++aGF+ +pl+   ++q++++l+ ++ dgy++ +e+g l+lgWk+rp++++SaW
  Glyma.08G237300.1.p 360 VAYEGQDRIERHERVDQWRRQLGRAGFQVMPLK--CNSQVRMMLSVYDCDGYTLSSEKGNLLLGWKGRPVIMASAW 433
                          ********************************7..569************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098511.63777258IPR005202Transcription factor GRAS
PfamPF035147.7E-24152266IPR005202Transcription factor GRAS
PfamPF035142.8E-49270433IPR005202Transcription factor GRAS
PROSITE profilePS5098516.998290416IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MEDINRWLSF YVNGSVNHDF AIRKYCPARM EQEQRGEWQD QEAAVVFYDT ELCSSSDATG  60
GSTPCLVSSE YEYENENQGS QEKHHQSFDH FVVNDEDDAY SMVNGGVFEY VPTTLEDSEL  120
EIHEALTTTM WEEEVQICGS FGAIPELETR CFAKGLKCRL SLLPHNVIAN GTLTSISMDV  180
PLISRENKME AFQLLYQTTP YISFGFMGAN EVIYQASQGK SSMHIVDLGM ENTLQWSSLI  240
RALASRPEGH PTLRITGLTG NEDNSNLQTS MNVLLNKYVK ESRGYLKEIL LSIKKLGPTA  300
LTVVEQDTNH NGHFFLGRFL ESLHYYSAIF DSLEPSMPRN RQHRMKIERL HFAEEIRNVV  360
AYEGQDRIER HERVDQWRRQ LGRAGFQVMP LKCNSQVRMM LSVYDCDGYT LSSEKGNLLL  420
GWKGRPVIMA SAW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-4218943395377Protein SCARECROW
5b3h_D4e-4218943395377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G237300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-153AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028202548.10.0DELLA protein RGL1-like
TrEMBLA0A0R0IZK30.0A0A0R0IZK3_SOYBN; Uncharacterized protein
STRINGGLYMA08G25800.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132512730
Representative plantOGRP70521119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-52RGA-like 1