PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G227500.2.p
Common NameGLYMA_08G227500, LOC100789242
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 856aa    MW: 97581 Da    PI: 6.7178
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G227500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.47.5e-1664138190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +f+++YA++vGFs+ + + ++ k +g i++ +f Cs+e +++++               ++C+a+l+v+++ dg+w vtk++++HnH+la
  Glyma.08G227500.2.p  64 SFFDAYARHVGFSTHVGQFSRAKPDGPIITWDFACSREVFKRKNI--------------VSCNAMLRVERK-DGNWIVTKFVEDHNHSLA 138
                          59**************************************99865..............55*********9.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.3E-1364138IPR004330FAR1 DNA binding domain
PfamPF105518.0E-31268360IPR018289MULE transposase domain
PfamPF044342.0E-11533579IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.338545581IPR007527Zinc finger, SWIM-type
SMARTSM005755.6E-8556583IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    Send to blast
MDVEAVDEGE NSDRPASENV ETEKGQEQNM TVNLAEREVN NQNGDAYRKP QVGMLFESED  60
AAKSFFDAYA RHVGFSTHVG QFSRAKPDGP IITWDFACSR EVFKRKNIVS CNAMLRVERK  120
DGNWIVTKFV EDHNHSLASS RKVQNLQPGR HFVGAARNVT TETFDARNES YVSVNGNHLE  180
PIGSVRSSSL AEKCHPMRNI ESLTYARSSR KRTLGRDAQN LLNYFKKMQG ENPGFYYAIQ  240
LDDENRMTNV FWADARSRTA YNYFGDAVIF DTMYRPNQYQ VPFAPFTGFN HHGQMVIFGC  300
ALLLDESESS FTWLFKTWLS AMNDRPPVSI TTDQDRAIQA AVAHVFPETR HCICKWHILR  360
EGQERLAHIY LAHPSFYGDL YSCINFSETT EDFESTWKSL LDKYDLQKND WLQAVYNARK  420
QWAPVYFHDT FFAAITSNHG VSSFFDGYVN QQTTISLFFR QYERSLEHSL EKEIEADYET  480
VCNTPVLKTP SPMEQQAANM YTKKIFAKFQ EELVETFAYT ANNVEDDGVI SKYRVAKYEY  540
DHKAYMVTLN ISEMKANCSC QMFEYSGILC RHILTVFTVT NVLTLPSHYI LKRWTTNAKS  600
DIRTYEKITD PLDIENLTVR FNSLCREAIK LAEEGAIAVE TYNATMNALR EGAKRVGIMK  660
KNVAKVTPPN THGNGSCLED NSKKRPSSIS DVIPSLWPWQ DSVPHHFNLN DLGLPVTDLN  720
TPSMAPVSIH RDGGPLDNTV VLTCFKSMTW MIENKNSSSS SKIAVINMKL QDYGKGPLGE  780
TEVQFRVTRV TLEPMLRSMT YINQQLNAPV NRVAIINLRL QDTKTTTGQT EVKFQVSRDT  840
LGSMLRSMAY IQEQL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.385070.0meristem| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G227500.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530369.10.0protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_014634675.10.0protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_014634676.10.0protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_028244784.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X1
RefseqXP_028244785.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X1
RefseqXP_028244786.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X1
RefseqXP_028244787.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X1
RefseqXP_028244788.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X1
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A445JIP10.0A0A445JIP1_GLYSO; Protein FAR1-RELATED SEQUENCE 3 isoform A
TrEMBLK7L8840.0K7L884_SOYBN; Uncharacterized protein
STRINGGLYMA08G24400.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]