PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G202100.1.p
Common NameGLYMA_08G202100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 339aa    MW: 37500.8 Da    PI: 7.6662
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G202100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.57.5e-18225259135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C +Cg+ kTp+WR gp g+ktLCnaCG+++++ +l
  Glyma.08G202100.1.p 225 CLHCGAEKTPQWRTGPMGPKTLCNACGVRFKSGRL 259
                          99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.1E-7718313IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.321219255IPR000679Zinc finger, GATA-type
SMARTSM004012.6E-16219269IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.14E-14222283No hitNo description
Gene3DG3DSA:3.30.50.102.3E-14223257IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.31E-13224271No hitNo description
PROSITE patternPS003440225250IPR000679Zinc finger, GATA-type
PfamPF003201.9E-15225259IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEAPEYFVGG YFGAGGAEQF SLSEKRHSDQ KTGEPFAIDD LLDFSHADAI MSDGFFDNVT  60
GNSTDSSTVT AVDSCNSSIS GSDNHFATAI VPRCYHSDPQ FSGELCVPYD EMAELEWLSN  120
FVEDSFSAEE ELKTLQLLSG GGAARRSPPP PPTRFRRSPP DGTLRNAPFL HSETPRPGKA  180
RSKRSRAAPG DWSTRLLHLV APEKEKPPQA KKREGTNVEC SGRKCLHCGA EKTPQWRTGP  240
MGPKTLCNAC GVRFKSGRLV PEYRPAASPT FMSTKHSNSH RKVLELRRQK EMQRQQHHQQ  300
LMSQSSIFGV SNGGDEFSIH HHHHNHHLHC GPDFRHVI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.21880.0hypocotyl| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G202100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028245476.10.0GATA transcription factor 9-like
TrEMBLA0A0R0IV540.0A0A0R0IV54_SOYBN; GATA transcription factor
STRINGGLYMA07G01960.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-60GATA transcription factor 9