PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G195700.1.p | ||||||||
Common Name | GLYMA_08G195700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 121aa MW: 13578.5 Da PI: 10.1695 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00015 | 26 | 48 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k Fs+ L H + H Glyma.08G195700.1.p 26 FSCKYCNKKFSSYQALGGHHNAH 48 89**********99999998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.2E-4 | 23 | 52 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.62E-7 | 23 | 53 | No hit | No description |
PROSITE profile | PS50157 | 11.905 | 26 | 53 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.6E-8 | 26 | 50 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 28 | 48 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MESNHGKVVV TAALSNKSVP LMKKEFSCKY CNKKFSSYQA LGGHHNAHKA EREAEKQNKI 60 LSNASAYYKK SFVGWFVYSN HNAYGYGFGG KTLGVSPLSM TRFKPFYYMS VTRDYQHVTA 120 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G195700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235904 | 0.0 | AC235904.2 Glycine max clone GM_WBc0179J02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028246646.1 | 2e-84 | zinc finger protein KNUCKLES-like | ||||
TrEMBL | A0A0R0IX20 | 7e-84 | A0A0R0IX20_SOYBN; Uncharacterized protein | ||||
STRING | XP_007135583.1 | 9e-27 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16697 | 2 | 4 | Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14010.1 | 9e-12 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G195700.1.p |