PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G188900.1.p
Common NameGLYMA_08G188900, LOC100814414
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 638aa    MW: 73071.3 Da    PI: 8.7571
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G188900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.4e-08459500240
                          SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                          ++W++eE +ll ++ +++++g   +W+ I++++g+gR+ +++
  Glyma.08G188900.1.p 459 KPWSKEEIDLLRKGMQKYPKGtsrRWEVISEYIGTGRSVEEI 500
                          69************************************9987 PP
2Myb_DNA-binding271.1e-08580623344
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                           W++  +  lv+a k ++++   +W+++a  ++ g+t +qck ++
  Glyma.08G188900.1.p 580 VWSAVQERALVQALKAFPKEtsqRWERVATAVP-GKTVNQCKKKF 623
                          6********************************.********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR006251.8E-84866IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.8E-2091196IPR001623DnaJ domain
SuperFamilySSF465657.33E-1994201IPR001623DnaJ domain
SMARTSM002713.9E-1394169IPR001623DnaJ domain
PfamPF002261.2E-1695174IPR001623DnaJ domain
CDDcd062574.59E-1295166IPR001623DnaJ domain
PROSITE profilePS5007618.01495177IPR001623DnaJ domain
PRINTSPR006251.8E-8118133IPR001623DnaJ domain
PRINTSPR006251.8E-8149169IPR001623DnaJ domain
PROSITE patternPS006360154173IPR018253DnaJ domain, conserved site
SuperFamilySSF466896.65E-8453502IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-5453501IPR009057Homeodomain-like
PROSITE profilePS500906.69453508IPR017877Myb-like domain
SMARTSM007171.8E-7457510IPR001005SANT/Myb domain
PfamPF002492.9E-7459500IPR001005SANT/Myb domain
CDDcd001671.82E-5460502No hitNo description
PROSITE profilePS512939.351576631IPR017884SANT domain
Gene3DG3DSA:1.10.10.603.4E-5577623IPR009057Homeodomain-like
SMARTSM007179.8E-9577629IPR001005SANT/Myb domain
SuperFamilySSF466897.03E-9579633IPR009057Homeodomain-like
PfamPF002497.1E-7580623IPR001005SANT/Myb domain
CDDcd001676.10E-6581627No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MAVHTKFRLI TYSQEIVDGQ PIFVSSNCLP IKALKFEPAG HSFHSAALKL LGVQEDNKDA  60
DDKKVVDDKE QTYLPSDSYS SKSKKKTGTG DMQQDHYALL GLGHLRYLAT EDQIRKSYRE  120
TALRFHPDKQ AALLLAEETE AAKQAKKDEI ESHFKAIQEA YEVLIDPLKR RIYDSTDEFD  180
DEIPTDCAPQ DFFKVFGPAF MRNGRWSVNQ SIPSLGDDNT PIKEVDNFYN FWYSFKSWRE  240
FPHADEFDLE QAESRDHKRW MERQNAKLTE KARKEDYARI RTLVDNAYKR DPRILRRKEE  300
EKAEKQRKKE AKFLAKKLQE EEAARIAEEE RQRKEEEERQ ATEAALQQKK VKEKEKKLLR  360
KERARLRTLS GPILSHHLLD ISDDDVERLC MSLDIQQLRS LCENMGGRQM LLEQAKVLRD  420
ALSSKKEEAV DEKTNQQNAN GSIKANGSPS LSNIEKKEKP WSKEEIDLLR KGMQKYPKGT  480
SRRWEVISEY IGTGRSVEEI MKATKTVLLQ KPDSSKAFDT FLEKRKPGAQ SIESPLTTRE  540
ELGVPAPASS TNNAEDSQNK GTDDQNSPAN GVSSSSEQDV WSAVQERALV QALKAFPKET  600
SQRWERVATA VPGKTVNQCK KKFALMKESF RNKKTAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-1919129420123Zuotin
5dje_B1e-1919129420123Zuotin
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.45670.0flower| hypocotyl| meristem| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G188900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003531595.10.0dnaJ homolog subfamily C member 2
TrEMBLI1KUP60.0I1KUP6_SOYBN; Uncharacterized protein
STRINGGLYMA08G20150.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Representative plantOGRP38231521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain