PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G153800.4.p
Common NameGLYMA_08G153800, LOC100817071
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 364aa    MW: 40789.2 Da    PI: 7.0407
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G153800.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.88.7e-093454526
                         --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                          C f+++ G C yG+rC++ H+
  Glyma.08G153800.4.p 34 VCTFYQK-GVCAYGSRCRYDHV 54
                         5******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.249128IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-4127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-7426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4272956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00293055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-43453IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-63454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.77141168IPR000571Zinc finger, CCCH-type
SMARTSM003560.12142167IPR000571Zinc finger, CCCH-type
SuperFamilySSF578504.01E-13198274No hitNo description
Gene3DG3DSA:3.30.40.102.1E-9203269IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00144209269No hitNo description
PROSITE profilePS5008912.017210268IPR001841Zinc finger, RING-type
SMARTSM001848.3E-6210267IPR001841Zinc finger, RING-type
PfamPF000979.6E-7210267IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180234243IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.563297326IPR000571Zinc finger, CCCH-type
SMARTSM003560.042297325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MSKRFLCKFF AHGACLKGEH CEFSHDWKDP PNNVCTFYQK GVCAYGSRCR YDHVKASREQ  60
SSAPSSSVIE PQTLVSDTVA FGNTRAASNG VATGAEFSLS SSPYLLPSEP AWNRELVWNQ  120
EFGYHEPLWE DNVGQSIITS PSELSICSFA GAGNCPRGEK CPHIHGDLCP TCGKHCLHPF  180
RPEEREEHMK TCENKRKHLE ALKQSQEIEC SVCLEHVLSK PTAAECKFGL LSECDHPFCI  240
SCIRNWRSSN PTLGMDVNST LRACPICRKL SYFVIPSVIW YSTTEEKQEI INNYKAKLKS  300
IDCKHFDFGE GNCPFGTSCF YKHAFQDGRL EQVVLRHLGA AEGDTVIAKD IRLSDFLSNM  360
HLR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.628020.0cotyledon
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G153800.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003531437.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X1
RefseqXP_006585350.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X1
SwissprotE0X9N41e-172C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLI1KTL60.0I1KTL6_SOYBN; Uncharacterized protein
STRINGGLYMA08G16340.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-157C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]