PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G132800.2.p
Common NameGlyma08g14130.1
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 276aa    MW: 31350.5 Da    PI: 4.5212
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G132800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox598e-192073356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         k+++++ +q+++Le+ Fe ++++  +++ +LA++lgL+ rqV vWFqNrRa++k
  Glyma.08G132800.2.p 20 KKRRLSVDQVKALEKNFEVENKLEPDRKLKLAQELGLQPRQVAVWFQNRRARWK 73
                         566899***********************************************9 PP
2HD-ZIP_I/II127.65.2e-4119111193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrls +qvk+LE++Fe e+kLep+rK +la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++y++lk + ++L++++e+L +e
  Glyma.08G132800.2.p  19 EKKRRLSVDQVKALEKNFEVENKLEPDRKLKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYESLKLNYDTLQQDHEALLKE 108
                          69**************************************************************************************99 PP

          HD-ZIP_I/II  91 lke 93 
                          +ke
  Glyma.08G132800.2.p 109 IKE 111
                          987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.82E-191277IPR009057Homeodomain-like
PROSITE profilePS5007117.4271575IPR001356Homeobox domain
SMARTSM003899.2E-181879IPR001356Homeobox domain
PfamPF000465.0E-162073IPR001356Homeobox domain
CDDcd000861.58E-162076No hitNo description
Gene3DG3DSA:1.10.10.607.2E-202282IPR009057Homeodomain-like
PRINTSPR000319.9E-64655IPR000047Helix-turn-helix motif
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
PRINTSPR000319.9E-65571IPR000047Helix-turn-helix motif
PfamPF021835.1E-1675116IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MLEGLDEEGC VEEPGHHSEK KRRLSVDQVK ALEKNFEVEN KLEPDRKLKL AQELGLQPRQ  60
VAVWFQNRRA RWKTKQLERD YGVLKANYES LKLNYDTLQQ DHEALLKEIK ELKSRLVQEE  120
NNNNTESDVS VKEEMLTTTL CETAIPGSDT KELSYECFNK SDEVGGGSSV FHVDFKDGSS  180
DSDSSAILNE ENNNHSPNNN AAISSCGVLQ SHGLLLSPSS SSMNNCFQFQ KQYQTTTTQY  240
VKMEEHNFLS ADEACNFFSD EQAPTLQWYC SEEWS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16775RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.320000.0cotyledon| epicotyl| leaf| meristem| pod| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with a lower level in siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G132800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1842770.0AF184277.2 Glycine max homeodomain-leucine zipper protein 56 (Hdl56) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238442.10.0homeodomain-leucine zipper protein 56
RefseqXP_006584635.10.0homeodomain-leucine zipper protein 56 isoform X1
RefseqXP_028243735.10.0homeobox-leucine zipper protein ATHB-6-like
SwissprotQ940J13e-72ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A0K2CT980.0A0A0K2CT98_SOYBN; Homeodomain/HOMEOBOX transcription factor (Fragment)
TrEMBLA0A445JE640.0A0A445JE64_GLYSO; Homeobox-leucine zipper protein ATHB-16
TrEMBLI1KSY30.0I1KSY3_SOYBN; Uncharacterized protein
TrEMBLQ9SP480.0Q9SP48_SOYBN; Homeodomain-leucine zipper protein 56
STRINGGLYMA08G14130.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.16e-65homeobox protein 16
Publications ? help Back to Top
  1. Tang Z,Sadka A,Morishige DT,Mullet JE
    Homeodomain leucine zipper proteins bind to the phosphate response domain of the soybean VspB tripartite promoter.
    Plant Physiol., 2001. 125(2): p. 797-809
    [PMID:11161037]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]