PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G067200.1.p
Common NameGLYMA_08G067200, LOC100785549
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 359aa    MW: 39895.3 Da    PI: 5.0107
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G067200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.62.2e-15196232135
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  Glyma.08G067200.1.p 196 CQHCGISEksTPAMRRGPAGPRSLCNACGLMWANKGT 232
                          *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.8495691IPR010399Tify domain
SMARTSM009798.3E-75691IPR010399Tify domain
PfamPF062005.6E-116090IPR010399Tify domain
PROSITE profilePS5101712.798127169IPR010402CCT domain
PfamPF062036.1E-15127168IPR010402CCT domain
PROSITE profilePS501148.8190247IPR000679Zinc finger, GATA-type
SMARTSM004016.8E-13190243IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.7E-12191244No hitNo description
Gene3DG3DSA:3.30.50.105.8E-15194237IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.44E-15195238No hitNo description
PROSITE patternPS003440196223IPR000679Zinc finger, GATA-type
PfamPF003202.2E-13196232IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDNSTLNNPG DNAEDPPPPP APMQVFDSFQ PFHYANGSDE GEEAVPAPVA NASSAMRARA  60
SELTISFEGE VYVFPAVTPE KVQAVLLLLG AQEMPNSAPT SDFLLQQNYQ DIREINDPSR  120
SSKLSRRFAS LVRFREKRKE RCFEKKIRYS CRKEVAQRMH RKNGQFASLK EDYKSPAENW  180
DSSNGTPCPD STERRCQHCG ISEKSTPAMR RGPAGPRSLC NACGLMWANK GTLRDLSKAG  240
RIAFEQNELD TSADIKPSTT EAKHSYAKQG KEGSPEETKP VQMDSRRSPE KTNEQFIIGT  300
AESVTNNLSV RLENHALILH EQDTLEDLAD ASGTEFEIPA GFDDQVDIDD ANMRTYWL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.187170.0cotyledon| pod| somatic embryo| vegetative bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G067200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0063581e-45AP006358.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT36C13, TM0100b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532598.10.0GATA transcription factor 24
RefseqXP_028244801.10.0GATA transcription factor 24-like
SwissprotQ8GXL79e-64GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A445JAX00.0A0A445JAX0_GLYSO; GATA transcription factor 24 isoform A
TrEMBLI1KQX60.0I1KQX6_SOYBN; Uncharacterized protein
STRINGGLYMA08G07170.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.12e-54ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]