PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G065400.1.p
Common NameGLYMA_08G065400, LOC100779647
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 25240.2 Da    PI: 9.8989
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G065400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.48e-281059251
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         ri+n++ rqvtfskRrng+ KKA ELS+LCdaev +i+fsstgkly+y+s
  Glyma.08G065400.1.p 10 RIDNSTSRQVTFSKRRNGLVKKARELSILCDAEVGLIVFSSTGKLYDYAS 59
                         8***********************************************86 PP
2K-box78.51.6e-2681170998
                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                          + +++ + +q+e+a L+++++ +q+ +R+++G++L+ L ++eL +Le++Le slk +R kK+++l+++++el +k   +++en +L++k+
  Glyma.08G065400.1.p  81 NPASEVKLWQREVASLRQQVQYMQECHRQMMGQELSGLGIEELGNLEKRLEMSLKGVRMKKDQILIDEVKELHQKGSLAHQENVELNRKI 170
                          56788999********************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.861161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-33291IPR002100Transcription factor, MADS-box
CDDcd002654.94E-45278No hitNo description
PRINTSPR004046.7E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003199.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-2384170IPR002487Transcription factor, K-box
PROSITE profilePS5129713.85986176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLVK KARELSILCD AEVGLIVFSS TGKLYDYAST  60
SMKSVIERYN KVKEDHQQLI NPASEVKLWQ REVASLRQQV QYMQECHRQM MGQELSGLGI  120
EELGNLEKRL EMSLKGVRMK KDQILIDEVK ELHQKGSLAH QENVELNRKI NLIRKENEEL  180
QKVIEAKCRK GVAASNPPFT INYGCNMLAP ISLQLSLPES T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-23181181MEF2C
5f28_B2e-23181181MEF2C
5f28_C2e-23181181MEF2C
5f28_D2e-23181181MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G065400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-74AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014634038.11e-162MADS-box transcription factor 23 isoform X1
RefseqXP_014634039.11e-162MADS-box transcription factor 23 isoform X1
RefseqXP_028242478.11e-162MADS-box transcription factor 23-like isoform X1
RefseqXP_028242479.11e-162MADS-box transcription factor 23-like isoform X1
SwissprotQ6EP496e-92MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A0B2SNY51e-161A0A0B2SNY5_GLYSO; MADS-box transcription factor 27
TrEMBLK7L5A01e-161K7L5A0_SOYBN; Uncharacterized protein
STRINGGLYMA08G07001.11e-161(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.13e-90AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]