PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G053700.1.p
Common NameGLYMA_08G053700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WOX
Protein Properties Length: 239aa    MW: 27673.2 Da    PI: 10.6011
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G053700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox70.61.9e-2282141357
                          --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  Glyma.08G053700.1.p  82 SRWNPTPEQLRALEELYRRgTRTPSAEQIQQITAQLrrfgKIEGKNVFYWFQNHKARERQ 141
                          7*****************99**************************************97 PP
2Wus_type_Homeobox115.72.3e-3781143365
    Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L+++Gkie+kNVfyWFQN+kaRerqk+
  Glyma.08G053700.1.p  81 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKR 143
                          79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003899.5E-579146IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-982141IPR009057Homeodomain-like
SuperFamilySSF466893.59E-1382148IPR009057Homeodomain-like
PfamPF000463.5E-2082141IPR001356Homeobox domain
CDDcd000863.06E-683143No hitNo description
PROSITE profilePS5007111.45187142IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MWMVGYNEGA EFNMADYGFN GRKLRPLMPR PVTSPNNTSN TNSPYLTRIH HGNDFFSQYH  60
NLASVADQGK REFNPPPVVV SSRWNPTPEQ LRALEELYRR GTRTPSAEQI QQITAQLRRF  120
GKIEGKNVFY WFQNHKARER QKRRRQMESV VAEGHHTRDF DSTLEKKTSA QVGQCLKLNR  180
PRTGHPLQTA VLLQRNLLQY KGQQKQPLQS VEQMDGSNSM KESYNIEETL WRGMPRGI*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically expressed during initiation of the shoot apical meristem, when cotyledonary primordia arise at the flanks of the apical embryo domain phase. Confined to the initiating vascular primordium of the cotyledons during heart and torpedo stages, but only weakly expressed during bent cotyledon stage. {ECO:0000269|PubMed:14711878}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G053700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530958.11e-124WUSCHEL-related homeobox 1
SwissprotQ6X7K03e-53WOX1_ARATH; WUSCHEL-related homeobox 1
TrEMBLK7L5321e-178K7L532_SOYBN; Uncharacterized protein
STRINGGLYMA08G05831.11e-179(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Representative plantOGRP8416716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.12e-51WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]