PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G031400.1.p | ||||||||
Common Name | GLYMA_08G031400, LOC100808676 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C3H | ||||||||
Protein Properties | Length: 356aa MW: 39583.3 Da PI: 7.4801 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.3 | 1.1e-07 | 119 | 139 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck Gd C +aHg Glyma.08G031400.1.p 119 ACPDFRK-GSCKKGDACEYAHG 139 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.08 | 66 | 103 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 114 | 140 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.497 | 115 | 141 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-5 | 118 | 141 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.9E-6 | 119 | 139 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.643 | 149 | 173 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 14 | 149 | 172 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MMLGETHRAN PTVHVPPWTP EIFSPYTGNA DYSPYSLQEA LSALQHYEST DAESDSEFPS 60 REPEVPVDAY SCDHFRMFEF KVRRCARGRS HDWTECPYAH PGEKARRRDP RKYHYSGTAC 120 PDFRKGSCKK GDACEYAHGV FECWLHPARY RTQPCKDGTS CRRRVCFFAH TPEQLRVLPQ 180 QSPRSADSYD GSPLRHAIES SCAKTLAPAP FVSSPGSVSP PLESPPMSPM TVSVNEMVAS 240 LRNLQLGKVK SLPSSWNVMG PSGFGSPRGP MIRPGFFSLP TTPTQAPTRG GVNYFDKWDQ 300 SCEEEPVMER VESGRNIRAR MFAKLSKENH LDGSDSGSGQ IGDPDVGWVS ELVSR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.25491 | 0.0 | somatic embryo| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G031400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098667 | 0.0 | BT098667.1 Soybean clone JCVI-FLGm-23G10 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003530556.1 | 0.0 | zinc finger CCCH domain-containing protein 20 | ||||
Refseq | XP_028242742.1 | 0.0 | zinc finger CCCH domain-containing protein 20-like | ||||
Swissprot | O82199 | 1e-129 | C3H20_ARATH; Zinc finger CCCH domain-containing protein 20 | ||||
TrEMBL | A0A445J9E6 | 0.0 | A0A445J9E6_GLYSO; Zinc finger CCCH domain-containing protein 20 | ||||
TrEMBL | I1KPU6 | 0.0 | I1KPU6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G03540.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2056 | 31 | 76 | Representative plant | OGRP1170 | 16 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-127 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G031400.1.p |
Entrez Gene | 100808676 |
Publications ? help Back to Top | |||
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