PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G027800.1.p
Common NameGLYMA_08G027800, LOC100791531
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 1114aa    MW: 122551 Da    PI: 6.2571
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G027800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.93.4e-22132233199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr+k++r++lt+GW+ F + ++L +gD+v+F  
  Glyma.08G027800.1.p 132 FCKQLTASDTSTHGGFSVPRRAAEKIfppldySLQSPV-QELVARDLHDNVWRFRHIYRGKPKRHLLTTGWSLFISGKRLLAGDSVLFV- 219
                          99****************************99444444.38************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           ++++++l+++++r+
  Glyma.08G027800.1.p 220 -RDEKQQLLLGIRRA 233
                          .5688889****997 PP
2Auxin_resp112.24.8e-37258341183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa+a++++s+F+v+YnPras+seFv++++k+ ka++ +++s+Gm f+m feteds +rr++Gt++gvsdld+vrW+nS Wr+L+
  Glyma.08G027800.1.p 258 AAQAVANNSPFTVFYNPRASPSEFVIPLAKYYKAVYsHHISPGMHFRMTFETEDSGTRRYMGTIIGVSDLDSVRWKNSLWRNLQ 341
                          789*******************************99899*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.88E-40121260IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-38126247IPR015300DNA-binding pseudobarrel domain
CDDcd100177.06E-18131223No hitNo description
PROSITE profilePS5086311.66132234IPR003340B3 DNA binding domain
PfamPF023629.9E-20132233IPR003340B3 DNA binding domain
SMARTSM010191.7E-21132234IPR003340B3 DNA binding domain
PfamPF065076.7E-33258341IPR010525Auxin response factor
PfamPF023095.3E-79981086IPR033389AUX/IAA domain
PROSITE profilePS5174526.85610011085IPR000270PB1 domain
SuperFamilySSF542775.0E-610141079No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1114 aa     Download sequence    Send to blast
MITQPPDAAP AVAPNSGEGG EKKSINAELW QACAGPLLNL PSPGTHVVYF PQGHSEQVAA  60
SLKKDVDAQV PNYTNLPSKI PCLLHNVTLH ADPDTDEVYA QMALRPVPSF DTDALLRSDI  120
SLKLSKPQPE FFCKQLTASD TSTHGGFSVP RRAAEKIFPP LDYSLQSPVQ ELVARDLHDN  180
VWRFRHIYRG KPKRHLLTTG WSLFISGKRL LAGDSVLFVR DEKQQLLLGI RRANRQPSNL  240
SSSVLSSDSM HIGVLAAAAQ AVANNSPFTV FYNPRASPSE FVIPLAKYYK AVYSHHISPG  300
MHFRMTFETE DSGTRRYMGT IIGVSDLDSV RWKNSLWRNL QVGWDESTAE DRRSRVSVWE  360
IEPVTTPYFI CPPPFFRSKR PRLLGMPDDE PDFNNLFKST VPWLGDDMCI KDPQALPGLS  420
LVQWMNMQQN PALASSLQPN CVPSMSGLVL QNLPGADIAN QLGFSTSQTS QSNNVSVNAQ  480
NILQTSQQLD HIQKLPCPSS ALGAVTQLPQ QLADITQQPR NLTNQTLPQN EAHTQLLNSQ  540
RVVQTNNILQ QQQSSIQNHQ LLRSLSQNPP QKDQQTTFGQ NERQNVFQSP MPDHFNQQLQ  600
MSDNQVRFQL LQKLQQQQQT LLAQQSALQQ PALIQVQDQQ RQLLDVTNNS SSLISGQVLE  660
NPPTLQNSLP EANSVTHQIT MPSSQKNFHY SHLSQQPALL SEMSGHAGLL PTVTTNPLSA  720
SGGSILTGAG QSVITDDVPS CSTSPSTNNR ASALPPVVSS QIHRSTTIGD DMAQSAVTIS  780
GPSTLETLSS NANMVKDVRP KYEVKPSSNI SKNQNHGNVA RQMYLNGVVQ TDYLDSSSST  840
TSLYHFQSDT HMHQNNNPFS YNPQLIYCRD NSQNVEVQAD ARSNVPFVND INGQMGMPSN  900
LDSLLTNGTV GLGKDLSNNF SSGGLLGDLE NNKGVQPELS SSMVSQTFEV PDMSFNSIDS  960
TIDGSSFLNR GPWDLPPPPP PPPPPPPPPP PQQQQQIQRI RTYTKVYKRG AVGRSIDITR  1020
YSGYEELKQD LALKFGIEGQ LEDRERIGWK LVYVDHENDV LLVGDDPWEE FVNCVRCIKI  1080
LSPQEVQQMS LDGDFGNGGL PYPAGSSSGG GNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1581936245388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G027800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353420.0AC235342.1 Glycine max strain Williams 82 clone GM_WBb0088H14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532453.10.0auxin response factor 19 isoform X1
RefseqXP_006584791.10.0auxin response factor 19 isoform X1
TrEMBLK7L4N00.0K7L4N0_SOYBN; Auxin response factor
STRINGGLYMA08G03141.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Representative plantOGRP41931125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19