PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G021900.1.p
Common NameGLYMA_08G021900, Glyma08g02580.1, LOC100127375
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 360aa    MW: 40620.4 Da    PI: 6.39
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G021900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.57.5e-30130190259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +DgynWrKYGqK++ g+++prsYYrCt++   gC+++k+v+rs+edp++++itY+g+H+++
  Glyma.08G021900.1.p 130 EDGYNWRKYGQKDILGAKYPRSYYRCTFRstqGCWATKQVQRSDEDPTMFDITYRGNHTCS 190
                          8**************************988889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.917124187IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-29125191IPR003657WRKY domain
SuperFamilySSF1182905.89E-26128191IPR003657WRKY domain
SMARTSM007743.0E-41129191IPR003657WRKY domain
PfamPF031065.5E-27130189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MESDLSWERN TLINELIQGM EVARKLKADL KLPYSVDTRD LLLQRILSSY EKALLILRCS  60
NASTSELQGM NQATPTLLPE SPLSVHGSPL REDVHGAIKD HHNSKKRKIT PKWMDRVRVS  120
CESGLEGPHE DGYNWRKYGQ KDILGAKYPR SYYRCTFRST QGCWATKQVQ RSDEDPTMFD  180
ITYRGNHTCS QGNNAVLPPK SPEKHEKPAH SHNIDIHHAQ ASQESLAKFR SILSVNTDNL  240
DNGDMAYAFT FPSTSFGCMK QDNHSLIPLA LENDSFLSDL YQTHLLSPTT PESNYFPSPT  300
FQMNEFDGIY NRSHSKSDIN EIISTNTSAT NSPIPDFNFS LDPVEIDPNF PFNTPGFLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-191311871874Disease resistance protein RRS1
5w3x_D8e-191311871874Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.203370.0cotyledon| epicotyl| flower| meristem| root| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G021900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312350.0KT031235.1 Glycine max clone HN_CCL_109 WRKY transcription factor (Glyma08g02580.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001341099.10.0WRKY transcription factor 46
RefseqXP_028242650.10.0probable WRKY transcription factor 41
TrEMBLA0A445J8Y50.0A0A445J8Y5_GLYSO; Putative WRKY transcription factor 41
TrEMBLI1KPJ10.0I1KPJ1_SOYBN; WRKY transcription factor
STRINGGLYMA08G02580.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.15e-75WRKY family protein
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]