PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G238000.3.p
Common NameGLYMA_07G238000, LOC100788697
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 392aa    MW: 42484.8 Da    PI: 6.2894
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G238000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.43e-33209267159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK vk+s++prsYYrCt+a+C vkk+vers+edp+vv++tYeg+H+h+
  Glyma.07G238000.3.p 209 LDDGYRWRKYGQKAVKNSPHPRSYYRCTTATCGVKKRVERSSEDPTVVVTTYEGQHTHP 267
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.3E-35194269IPR003657WRKY domain
SuperFamilySSF1182902.62E-29201269IPR003657WRKY domain
PROSITE profilePS5081132.156204269IPR003657WRKY domain
SMARTSM007743.5E-39209268IPR003657WRKY domain
PfamPF031068.1E-27210267IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEEKREKEGN SKSSSTMANS VAFSDEIPNM SMSTSFPFSP AFSSIFDMMP PPPPSSSHDP  60
KAPNNFAGFM DLLAVPADYY APSLFDWPQN TTATSAPPPL TAQINHPLPS PASSNVPDGS  120
EVLNTPASPN YSSISSSSNE AAAAAAANKA TGNDNDVDDE TTIDAAAGRG EEDQDQDKTK  180
KQLKPKKKNQ KKQREPRFAF MTKSEVDHLD DGYRWRKYGQ KAVKNSPHPR SYYRCTTATC  240
GVKKRVERSS EDPTVVVTTY EGQHTHPCPA TSRASLGFMH SEASGGFGPT SGLGSAHFML  300
PQQQQFRDQA QAAMLLYNSN SSSLSLPLNV VNSASCVNNS YPNTSSLSGF LQGQENHQRS  360
VLAPHAFLRD NGLLQDIVPT HMRNEESEDR V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-29199270778Probable WRKY transcription factor 4
2lex_A1e-29199270778Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.305860.0hypocotyl| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G238000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150343e-65AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528613.10.0probable WRKY transcription factor 48
RefseqXP_014633692.10.0probable WRKY transcription factor 48
SwissprotO229002e-57WRK23_ARATH; WRKY transcription factor 23
TrEMBLI1KMP60.0I1KMP6_SOYBN; Uncharacterized protein
STRINGGLYMA07G36640.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.19e-48WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]