PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G230200.1.p
Common NameGLYMA_07G230200, LOC100814924
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 359aa    MW: 39158.2 Da    PI: 8.0767
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G230200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer106.51.6e-3362120360
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreveee 60 
                           v YkeClkNhAas+Ggha+DGCgEfm s+++  +++++lkCaACgCHRnFHRre++e+
  Glyma.07G230200.1.p  62 VVSYKECLKNHAASIGGHALDGCGEFMLSSSTVpSDPRSLKCAACGCHRNFHRREPQEN 120
                          689**************************88889*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.1E-2863117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2263119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.55765116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.0E-3065116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.0E-28221292IPR009057Homeodomain-like
SuperFamilySSF466892.93E-18221291IPR009057Homeodomain-like
TIGRFAMsTIGR015654.4E-26230287IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDLTSISTHN TNTTQTLDAA NTTTKTTPPT PIPTTTPKSL SFANGTLKRH PTTTVAQPPS  60
MVVSYKECLK NHAASIGGHA LDGCGEFMLS SSTVPSDPRS LKCAACGCHR NFHRREPQEN  120
NLNNNLKNNN PTFLNCIYTL SAPAPLSHRA MSQSTSPSLS SSPSHSQSPI SSPSPPPLSH  180
VPPYHASAPH MLLALGSAYS AEPSDEHHHH QQQQHKSFNL SMMRSENPTK KRYRTKFSKE  240
QKEKMHSFSE KLGWRMQKGD DGLVQEFCND IGVSRGVFKV WMHNNKNTFR KKSEDGNGNA  300
NAPQSNDDDN ANGGGGGFDS DINNPYNPNS NNNDIHMKEV DDACVNNVVH VSLNEMSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-222292881675ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.225870.0cotyledon| hypocotyl| leaf| root| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G230200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528585.20.0zinc-finger homeodomain protein 11
TrEMBLA0A0R0JCS90.0A0A0R0JCS9_SOYBN; Uncharacterized protein
STRINGGLYMA07G35760.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-52zinc finger homeodomain 1