PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G226800.2.p
Common NameGLYMA_07G226800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 482aa    MW: 54272.8 Da    PI: 8.9972
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G226800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017729123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C++C+k+F+   +L  HirtH
  Glyma.07G226800.2.p  7 YVCKYCSKRFPCGKSLGGHIRTH 29
                         9**********999999999998 PP
2zf-C2H211.50.00095430452123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C k F++   L  H r+H
  Glyma.07G226800.2.p 430 HECPICYKIFKSGQALGGHKRSH 452
                          79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-4529IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.9E-9529No hitNo description
SMARTSM003550.078729IPR015880Zinc finger, C2H2-like
PfamPF139129.8E-6729IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.388734IPR007087Zinc finger, C2H2
PROSITE patternPS000280929IPR007087Zinc finger, C2H2
SuperFamilySSF576671.9E-9108135No hitNo description
SMARTSM003550.14113135IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723113140IPR007087Zinc finger, C2H2
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
PfamPF139123.9E-7115137IPR007087Zinc finger, C2H2
SMARTSM003550.24430452IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.078430452IPR007087Zinc finger, C2H2
PfamPF139126.3E-11430452IPR007087Zinc finger, C2H2
PROSITE patternPS000280432452IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MEERKKYVCK YCSKRFPCGK SLGGHIRTHI MTEERSNDVV VVDGDDNNDN MFIKLDGTVM  60
RNNKKRDLLW CEDNNNPIYG LRENPKKTVR FVHSGGGANA NNNEQQQNKE DKRFCKECGK  120
GFPSLKALCG HMACHSEKEK RTTTTTIKFE EEKLVMDSRS DTETCAPTTH PRRSKRMRVK  180
KTINLSNHNP FFSFSSSSSS GVVPLANGSS PVSEVEQEEQ EEVARCLMLL SRDSSFNFKG  240
GRFASVTESS DNNSVILEAK LSSPDTRIGV SNGSRFFRYG PKTKMVDSDF SNDEFRWSKV  300
EGKSSKYTAS VVKKLGVEDL DYDTTHGTTR KFDSIKRNNY DLVGVSSKKI ASGFGNEVYK  360
NGTRGWKYEC FEVERDNDSY DSIDDESNEN SSETESFPAP RSHHKSKALN GKKCTKPKKK  420
LKPSKKSKDH ECPICYKIFK SGQALGGHKR SHFIGGSEEN TMVIKQVPYF IDLNLPAPVD  480
E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G226800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583954.10.0uncharacterized protein LOC102665457
RefseqXP_028241449.10.0uncharacterized protein LOC114419846
TrEMBLA0A0R0J7D70.0A0A0R0J7D7_SOYBN; Uncharacterized protein
STRINGGLYMA07G35330.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.15e-40C2H2-like zinc finger protein