PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G219400.1.p
Common NameGLYMA_07G219400, LOC102666678
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WOX
Protein Properties Length: 334aa    MW: 37234.1 Da    PI: 7.1537
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G219400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.39.9e-2277137257
                          T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          ++R+++t+ ql +Leel+++ +++psae+++++A++l    +++ ++V++WFqN++a+e++
  Glyma.07G219400.1.p  77 STRWSPTPVQLLVLEELYKQgTKTPSAEQIQQIASQLrqfgKIEGKNVFYWFQNHKARERQ 137
                          58*****************99**************************************97 PP
2Wus_type_Homeobox112.42.4e-3676139265
    Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          ++tRW+Ptp Q+ +Leelyk+G++tP++e+iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+
  Glyma.07G219400.1.p  76 HSTRWSPTPVQLLVLEELYKQGTKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKR 139
                          689***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.0573138IPR001356Homeobox domain
SuperFamilySSF466897.7E-1373141IPR009057Homeodomain-like
SMARTSM003893.4E-775142IPR001356Homeobox domain
PfamPF000462.6E-1978137IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.9E-1078137IPR009057Homeodomain-like
CDDcd000869.07E-678132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MSDSFGSTFH SSAPNSTLNS HAPPKITTFC SIAQPYCICT HCNHILTFNH HVGNLAEEGT  60
NSTGSHNNNV QSQPQHSTRW SPTPVQLLVL EELYKQGTKT PSAEQIQQIA SQLRQFGKIE  120
GKNVFYWFQN HKARERQKRR RREMEENNNN NAAASSSSGE GLKETGCGVK ETKKWASTSN  180
CSGHAEESAL DIAEKGSNGW TQFEERGSIQ VLRRNISEKQ AKLQEMEMPC FLPITIAAPT  240
TTSHRTTTHN TQLLSPQNYN NLSSSLINRE SLNYYGGDEN ADSRTLDLFP HKRDDQDGIS  300
LAERKSSSML CASASMDTEI TSNQFFEFLP LRN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G219400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150345e-76AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583912.10.0WUSCHEL-related homeobox 6
TrEMBLK7L3520.0K7L352_SOYBN; Uncharacterized protein
STRINGGLYMA07G34425.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151541012
Representative plantOGRP8416716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01500.11e-28WOX family protein