PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G216000.1.p
Common NameGLYMA_07G216000, LOC100814923
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 232aa    MW: 26161.6 Da    PI: 9.6548
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G216000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-161360148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W+++Ed++l+d++k++G  +W+t ++  g++R++k+c++rw +yl
  Glyma.07G216000.1.p 13 KGAWSKQEDQKLIDYIKKHGEVCWRTLPQAAGLHRCGKSCRLRWINYL 60
                         79******************99************************97 PP
2Myb_DNA-binding51.42.4e-1666110147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
  Glyma.07G216000.1.p  66 RGNFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110
                          8999******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.159860IPR017930Myb domain
SuperFamilySSF466895.35E-2811107IPR009057Homeodomain-like
SMARTSM007178.4E-141262IPR001005SANT/Myb domain
PfamPF002493.1E-141360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-221467IPR009057Homeodomain-like
CDDcd001671.34E-101560No hitNo description
PROSITE profilePS5129426.47961115IPR017930Myb domain
SMARTSM007173.0E-1565113IPR001005SANT/Myb domain
PfamPF002497.5E-1566110IPR001005SANT/Myb domain
CDDcd001677.87E-1168111No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2568116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MRKPSCDIKD LNKGAWSKQE DQKLIDYIKK HGEVCWRTLP QAAGLHRCGK SCRLRWINYL  60
RPDLKRGNFA EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IRRKLISKGI  120
DPNNHRLKHT IPSSLQNSLM SDDSSKAFSM KDTNKNETSK LPRVYNHVEV SDAASGEAES  180
PCALPDLNLD LSITNPSASQ SISGNNVKPF HESNSSRKVQ FDSPSTLLLF Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-3181152108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Function -- GeneRIF ? help Back to Top
  1. findings indicate that GmMYB100 is a negative regulator in soybean flavonoid biosynthesis pathway. [GmMYB100]
    [PMID: 26231207]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G216000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1356031e-119BT135603.1 Lotus japonicus clone JCVI-FLLj-12J12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528525.11e-171myb-related protein 308
SwissprotP813931e-76MYB08_ANTMA; Myb-related protein 308
TrEMBLI1KM311e-170I1KM31_SOYBN; Uncharacterized protein
STRINGGLYMA07G33960.11e-171(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-77myb domain protein 3
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Yan J, et al.
    The soybean R2R3 MYB transcription factor GmMYB100 negatively regulates plant flavonoid biosynthesis.
    Plant Mol. Biol., 2015. 89(1-2): p. 35-48
    [PMID:26231207]