PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G212400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 25456.6 Da PI: 4.8752 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 68.7 | 1.1e-21 | 95 | 145 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+W+AeIrdp+ r +r++lg+fgtae+Aa+a+++a+ +++g Glyma.07G212400.1.p 95 KKYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFGTAEDAARAYDKAAIEFRG 145 59********.**********82....48************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.6E-33 | 96 | 154 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-23 | 96 | 154 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.6E-39 | 96 | 159 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.3E-15 | 96 | 145 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.211 | 96 | 153 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.61E-34 | 97 | 153 | No hit | No description |
PRINTS | PR00367 | 9.3E-12 | 97 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-12 | 119 | 135 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MSSSSFSPAT LTTEQELSVI VAALTNVVAG STSASSSFSL PEFRLPQTSD PLAAACLMPP 60 PPPPSMDTCR ECNIAGCLGC NFFPEEKKKQ KRAKKKYRGV RQRPWGKWAA EIRDPRRAAR 120 VWLGTFGTAE DAARAYDKAA IEFRGPRAKL NFPLVDESLT LQQSEPERVQ TEEEQIKTEN 180 LNQGMEMDSF GNKDTEFWDR INEADFHQLM MMMDFAGDSS DSATGNALSS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-24 | 95 | 154 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.6754 | 0.0 | flower| meristem| root| seed coat |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00469 | DAP | Transfer from AT4G34410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G212400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095771 | 1e-173 | BT095771.1 Soybean clone JCVI-FLGm-19J6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014633006.1 | 1e-168 | uncharacterized protein LOC100820426 | ||||
Refseq | XP_028242320.1 | 1e-170 | ethylene-responsive transcription factor ERF109-like | ||||
Swissprot | Q9SZ06 | 2e-34 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A0R0JAK2 | 1e-170 | A0A0R0JAK2_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445JZL5 | 1e-170 | A0A445JZL5_GLYSO; Ethylene-responsive transcription factor ERF109 | ||||
STRING | GLYMA07G33511.1 | 1e-167 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2962 | 30 | 72 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 2e-31 | redox responsive transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G212400.1.p |
Publications ? help Back to Top | |||
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