PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.07G198900.2.p

Common Name

GLYMA_07G198900, LOC778101

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 316aa MW: 33798.1 Da PI: 9.0562

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G198900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.5e-39	16	76	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Glyma.07G198900.2.p 16 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRMK 76 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	7.7E-34	18	74	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	20	74	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-26	21	74	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	22	58	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MGRIMEKPSQ DLLQQQQQAL KCPRCDSSNT KFCYYNNYSL SQPRHFCKAC KRYWTRGGTL 60 RNVPVGGGCR KNKRMKRPTN GDSSSANSPS SSTPSASSNP PSQPHIDNII VSGSATNHIN 120 NINPLFYGGD VMNNVPFPKF NLLQSQLNAL GLGFSSGVRE NGFSTTSNNN FFSAYNSIFG 180 SSSSSTCAPS TPVMASLLSS TLLQQNFMGG GGGGVKGRDH DQGDNTFHGL APLQGLRVEG 240 DSNNNIGSKE VKGEGQNRFE WSNNNNNNNN NGGGGQNQME HVGLSDPNSL YWNTATGLGA 300 WSDQPNIGPS VTSLI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.28675	0.0	epicotyl\| hypocotyl

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G198900.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT094037	0.0	BT094037.1 Soybean clone JCVI-FLGm-14M14 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003529338.1	0.0	dof zinc finger protein DOF1.4 isoform X2
Refseq	XP_006583829.1	0.0	dof zinc finger protein DOF1.4 isoform X1
Refseq	XP_028241073.1	0.0	dof zinc finger protein DOF1.4-like isoform X1
Refseq	XP_028241074.1	0.0	dof zinc finger protein DOF1.4-like isoform X2
TrEMBL	A0A0B2Q8E3	0.0	A0A0B2Q8E3_GLYSO; Dof zinc finger protein DOF1.4
TrEMBL	A0A445JZ59	0.0	A0A445JZ59_GLYSO; Dof zinc finger protein DOF1.4
TrEMBL	I1KLM5	0.0	I1KLM5_SOYBN; Uncharacterized protein
TrEMBL	K7L2R4	0.0	K7L2R4_SOYBN; Uncharacterized protein
STRING	GLYMA07G31870.2	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	2e-35	Dof family protein

Link Out ? help Back to Top
Phytozome	Glyma.07G198900.2.p
Entrez Gene	778101