PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G188100.1.p
Common NameGLYMA_07G188100, LOC100784084
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 496aa    MW: 54237 Da    PI: 6.0913
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G188100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.60.000133894211754
                          HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           ++   L++l+ +      +K + a++L +A+eYIk L
  Glyma.07G188100.1.p 389 GDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKFL 421
                          55666677777776.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.668372421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.71E-5382425No hitNo description
SuperFamilySSF474594.97E-11382436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-8382432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MAEEFQARIC GENWWSSTTI DSTRSTVLFP LSSSSSSSSI SSSPCSVAAN NYDAGNYSTR  60
GTSDMDLKAT KCCAEETNNS LVSDTTYLGF VDAHKPHKSE SAASGSGGML TDSTLQMMGF  120
GLTSSSENWN QPLLFRCNGR AESNFHSLIQ EETGIDSSNS QIHRDWIPKS FSSDGGKQQI  180
DDNNFKPLLL NQQEFSLDDH SLSSLTTAGL SSNRGFPNGS ASSYGNPSTL QSLYDPNYNP  240
HPQHSLFTNR PMSYSSKACY GTPCTELPTW SKASTFFKPT TTTIAKQQHP NIGLHFSNNT  300
PFWNASAEAL HDIRVGTFAS TQSQYQRPTF DDEEKPNFPI TLLNRLNSEE ILESASMAKK  360
NVCEPALKRP RIETPSPLPT FKVRKEKLGD RVTALQQLVS PFGKTDTASV LHEAIEYIKF  420
LHDQVNVLST SYMKNGAPTQ QQQGCDDLKD SEGPQQDLKS KGLCLVPISS TFPVATGATS  480
ADQLWTPTFR GALLR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.386951e-98epicotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G188100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311203e-96KT031120.1 Glycine max clone HN_CCL_146 bHLH transcription factor (Glyma13g32320.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528420.10.0transcription factor bHLH112
RefseqXP_028240939.10.0transcription factor bHLH112-like isoform X1
TrEMBLA0A0B2PJD90.0A0A0B2PJD9_GLYSO; Transcription factor bHLH123
TrEMBLK7L2K90.0K7L2K9_SOYBN; Uncharacterized protein
STRINGGLYMA07G30745.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Representative plantOGRP31351129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.18e-50bHLH family protein