PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G158000.1.p
Common NameGLYMA_07G158000, LOC100806198
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 544aa    MW: 59545.9 Da    PI: 9.4974
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G158000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000137797323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C+ C+k F r  nL+ H r H
  Glyma.07G158000.1.p 77 CEVCNKGFQREQNLQLHRRGH 97
                         *******************88 PP
2zf-C2H2120.00065151173123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  +s+ k H +t+
  Glyma.07G158000.1.p 151 WKCDKCSKKYAVQSDWKAHSKTC 173
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.0E-57497IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.34E-77497No hitNo description
SMARTSM003550.0257597IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.977597IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM00355130116146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.0E-5139172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.34E-7146171No hitNo description
SMARTSM00355150151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MASASSSTPF LGIRQENQSQ FTQQHQSSTT AASSTTTTTP TTVPQKKRRN QPGTPYPDAE  60
VIALSPKTLM ATNRFLCEVC NKGFQREQNL QLHRRGHNLP WKLKQKTNKE PKRKVYLCPE  120
PTCVHHDPSR ALGDLTGIKK HYSRKHGEKK WKCDKCSKKY AVQSDWKAHS KTCGTREYRC  180
DCGTLFSRRD SFITHRAFCD ALAHESARHP SSVNHLGTHH LYGTNHMSLG LGAQLQNHQI  240
SATNSILSLG SEPKFEHLIS PNLHHSSSSS FGVQSPQSSS FFMTDPNHAF QDLQSQNQGH  300
LFSNKQLHGL MQLPDLQGNT NNNSTTSASS LSASANNTNL FNLSFFPNTN TSGSIINDQF  360
SNISGGNNNQ GTATLYSTNS PVSNNHVGNS SLSSLFGNSS VQQDNMSPHM SATALLQKAA  420
QMSSTTTTNN ELGMRSSIEN EHSSHLRGLL NSLANGNNLG QYHNVVEEPK KMSQNNLGLC  480
FGGSDKLTLD FLGVGGMVRN MNNGGGFSQR EQQQQHSMGI TMSPLDPKLE SAQANQHYGT  540
STL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34147215371Zinc finger protein JACKDAW
5b3h_F4e-34147215371Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.134490.0cotyledon| leaf| pod
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G158000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583684.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_006583685.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_028240554.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_028240555.10.0protein indeterminate-domain 5, chloroplastic-like
SwissprotQ8GYC11e-135IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A0B2PXR70.0A0A0B2PXR7_GLYSO; Protein indeterminate-domain 4, chloroplastic isoform A
TrEMBLK7L2000.0K7L200_SOYBN; Uncharacterized protein
STRINGGLYMA07G19470.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-103indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]