PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G157300.1.p
Common NameGLYMA_07G157300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 323aa    MW: 37687.7 Da    PI: 8.4384
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G157300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.99.8e-1510101199
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffkv   +++l++g+l +p +f+++h +g+   s  ++l  ++g + +v+    k ++ +++++GW+eF+k  +L++  fvvF+++g+s+
  Glyma.07G157300.1.p  10 FFKVI-LESTLRKGQLKVPSSFTRRHwQGI---SNPVILSLPNGTKRKVYW--LKDGCDVWFSNGWREFAKKLRLDVSHFVVFRYEGNSC 93 
                          55655.367788889***********8555...34599999**********..9************************************ PP

                          E..EEEEE-S CS
                   B3  90 felvvkvfrk 99 
                          f  +v +f k
  Glyma.07G157300.1.p  94 F--NVIIFGK 101
                          *..8877765 PP
2B356.35.7e-18213304398
                          EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                          + l+++ ++++++l+lp +f + + +k e++ tl +   +grsW+v l+++   g+ ++++GW++F  +n+Lk+gD++ F+l+++++f++
  Glyma.07G157300.1.p 213 TCLIQKTYTERDLLILPMEFSKPYLHK-EGNATLFVD--DGRSWDVGLRVNH-YGQLTFSRGWRKFSLENKLKVGDVCGFELHNSEKFSF 298
                          67899999*************999555.565555555..5********7555.46799***********************9988***** PP

                          EEEEE- CS
                   B3  93 vvkvfr 98 
                           v+++r
  Glyma.07G157300.1.p 299 EVSIYR 304
                          **9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-198102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.3919102IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-209109IPR015300DNA-binding pseudobarrel domain
CDDcd100172.25E-12999No hitNo description
SMARTSM010192.9E-1410102IPR003340B3 DNA binding domain
PfamPF023621.1E-121099IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.1E-19205304IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-19208304IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.24211306IPR003340B3 DNA binding domain
PfamPF023623.9E-15212304IPR003340B3 DNA binding domain
CDDcd100172.41E-14215304No hitNo description
SMARTSM010192.7E-15216306IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSSQGYGVHF FKVILESTLR KGQLKVPSSF TRRHWQGISN PVILSLPNGT KRKVYWLKDG  60
CDVWFSNGWR EFAKKLRLDV SHFVVFRYEG NSCFNVIIFG KSALEVEYPS SHDSNVEVEE  120
INDTDFSAKF GEDHTSKSSK KRKIIPKEED DDDDDEPKHC KKDSGFDYSK QKNGGWFYFL  180
ILFRSSQGDF KRRIKMFHEK VKEMFYAENE HFTCLIQKTY TERDLLILPM EFSKPYLHKE  240
GNATLFVDDG RSWDVGLRVN HYGQLTFSRG WRKFSLENKL KVGDVCGFEL HNSEKFSFEV  300
SIYRLEENSS TPIFKGSIIY LP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G157300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153107.11e-130hypothetical protein PHAVU_003G007500g
TrEMBLK7L1Z60.0K7L1Z6_SOYBN; Uncharacterized protein
STRINGGLYMA07G19395.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF140231017
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.12e-22B3 family protein