PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G154300.1.p
Common NameGLYMA_07G154300, LOC100792407
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 559aa    MW: 63292.5 Da    PI: 4.6441
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G154300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS122.84.2e-381925573374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lL +  ea+++g+++l + +L r+s+ asp g++++R a+y+ +++ ++           l+ ++      ++    l+++++ +Pi k
  Glyma.07G154300.1.p 192 HLLKAYGEALEQGQKALEEVTLRRISQKASPLGESLERFAFYLSQGMTNHGDY--------LKGEAF-----KNFGITLRALYQGFPIGK 268
                          78888999***************************************998766........444444.....466777899********* PP

                 GRAS  93 fshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpf 176
                          ++h++a ++Ilea+ ++ + vHi+Df i++G+QWp++++a+a       +l++T+++   +g     s  +  et+++L + A+++g+++
  Glyma.07G154300.1.p 269 IAHFAAVSTILEAMPQDyDVVHIVDFCIGHGVQWPPMIEAIAHM---HKTLKLTTIKWGGEGsecvsSPCNFDETRRQLYEHAKSCGLKL 355
                          **************9998999*********************86...456999999876555667778999******************* PP

                 GRAS 177 efnvlvakrledl..eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvksl.....sPkvvvvveqe..adh.nsesFl 254
                          + +    k +e+l  e+++++ k   +E la n+++ l ++   +v ++++  ++L++  +l     +  ++++ +     +  n+ +F 
  Glyma.07G154300.1.p 356 KVEE---KGVEELvtEIKKMNKKGgrREFLAFNCMIDLPHMG--KVRSRKNALQFLRVAEELintsgNRGIITFGDGGafEKVkNNLNFW 440
                          9987...56666622455555444779**************9..555555579999999988544445569***9998432336999*** PP

                 GRAS 255 erflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                            f   l +y  l++s+e+ +p+   e ri +E+ +l++ i+++   ++ e  +r  +l        e  ++  +ls+++ ++++ +lr+
  Glyma.07G154300.1.p 441 SFFYGHLVHYQILLESMESHFPTRFsEVRIAMEQLFLQPCISSLDWLQTWEEMKRGDHL------EAETSLEGCQLSKNILMEIREVLRE 524
                          ********************99875599*************999888888744554443......45788999***************** PP

                 GRAS 344 vk.sdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                           + s   ++e +++++lvl  k+ +L+ +S W+
  Glyma.07G154300.1.p 525 SEgSYQAKIEgQHDNELVLEYKGTQLLRFSTWK 557
                          **55555565888*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.912164535IPR005202Transcription factor GRAS
PfamPF035141.5E-35192557IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MMQSEDLQFQ WPFFEDMNST FDQGVESYGF TTMDDHVGNC EPYGFTMDDH VGNCEPYGFT  60
MDDHVGDCGL STLLSTPGDS TSEICSIPFP SSPMFSNDHI HIQYPINEET MDLPSLMELD  120
DFYSILDTQI ISIQGHGESE GSFFPSQNLS SEVENAWSPT PSVMSELSTN QTSPLTLPLE  180
NMEIEKQVSL PHLLKAYGEA LEQGQKALEE VTLRRISQKA SPLGESLERF AFYLSQGMTN  240
HGDYLKGEAF KNFGITLRAL YQGFPIGKIA HFAAVSTILE AMPQDYDVVH IVDFCIGHGV  300
QWPPMIEAIA HMHKTLKLTT IKWGGEGSEC VSSPCNFDET RRQLYEHAKS CGLKLKVEEK  360
GVEELVTEIK KMNKKGGRRE FLAFNCMIDL PHMGKVRSRK NALQFLRVAE ELINTSGNRG  420
IITFGDGGAF EKVKNNLNFW SFFYGHLVHY QILLESMESH FPTRFSEVRI AMEQLFLQPC  480
ISSLDWLQTW EEMKRGDHLE AETSLEGCQL SKNILMEIRE VLRESEGSYQ AKIEGQHDNE  540
LVLEYKGTQL LRFSTWKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G154300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530301.10.0nodulation-signaling pathway 2 protein
RefseqXP_028240511.10.0nodulation-signaling pathway 2 protein-like isoform X1
TrEMBLA0A445JX570.0A0A445JX57_GLYSO; Nodulation-signaling pathway 2 protein
TrEMBLK7L1X90.0K7L1X9_SOYBN; Uncharacterized protein
STRINGGLYMA07G18934.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Representative plantOGRP9520612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.12e-14GRAS family protein