PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.07G151100.1.p

Common Name

GLYMA_07G151100, LOC100778195

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 292aa MW: 35078.4 Da PI: 7.591

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G151100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	80	3.5e-25	49	131	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ qe+++ + +r e+++++ ++k++k+lWe +s +m+e+gf++s++qCk+kw+nl +ryk ++++e + +++++p++++l+ Glyma.07G151100.1.p 49 QWSIQETKEFLMIRAELDQTFMDTKRNKQLWEVISTRMKEKGFHKSAEQCKCKWKNLVTRYKGCETMEPEA---TRQQFPFYNELQ 131 7******************************************************************96...45679***98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	4.48E-21	48	113	No hit	No description
Pfam	PF13837	1.3E-20	49	133	No hit	No description
PROSITE profile	PS50090	7.004	50	106	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MEGHHLHHHH RQQQQQHHHQ QQHQQQQHHH HPHHNITTSN VDATDRFPQW SIQETKEFLM 60 IRAELDQTFM DTKRNKQLWE VISTRMKEKG FHKSAEQCKC KWKNLVTRYK GCETMEPEAT 120 RQQFPFYNEL QAIFAARMQR MLWAEAEGGS NKKKVHLSSE DEEEGNEETS EGDHKGNITS 180 KKKKKGKMVI GGGGSGNNNL ESLKEIMDEF MRQQMQMEAQ WMEAFEAREN ERRLKEMEWR 240 QTMEALENER LMMDQRWRER EEQRRIREEV RADKRDALIT ALLNKLRREE M*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in roots and flower buds. {ECO:0000269\|PubMed:15044016}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269\|PubMed:15044016}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G151100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-144	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006583658.1	0.0	trihelix transcription factor GT-3b
Refseq	XP_028240475.1	0.0	trihelix transcription factor GT-3b-like
Swissprot	Q9SDW0	2e-69	TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBL	A0A445JX20	0.0	A0A445JX20_GLYSO; Trihelix transcription factor GT-3a
TrEMBL	I1KKF8	0.0	I1KKF8_SOYBN; Uncharacterized protein
STRING	GLYMA07G18320.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1781	33	85
Representative plant	OGRP2262	15	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	2e-54	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Glyma.07G151100.1.p
Entrez Gene	100778195