PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G101000.1.p | ||||||||
Common Name | GLYMA_07G101000, LOC100819541 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WOX | ||||||||
Protein Properties | Length: 358aa MW: 40518.3 Da PI: 7.3472 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 70 | 2.8e-22 | 81 | 140 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psae++++++++l +++ ++V++WFqN++a+e++ Glyma.07G101000.1.p 81 SRWNPTPEQLRALEELYRRgTRTPSAEQIQHITAQLrrfgNIEGKNVFYWFQNHKARERQ 140 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 112.9 | 1.7e-36 | 80 | 142 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L+++G+ie+kNVfyWFQN+kaRerqk+ Glyma.07G101000.1.p 80 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQHITAQLRRFGNIEGKNVFYWFQNHKARERQKR 142 79***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 6.1E-5 | 78 | 145 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.46E-12 | 81 | 146 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-9 | 81 | 140 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.5E-20 | 81 | 140 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.18E-7 | 82 | 142 | No hit | No description |
PROSITE profile | PS50071 | 11.451 | 86 | 141 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MWMMGYEGGE FNMVEHSLIT GRKLKPLMPR PMTTSLNNAP TTTTPSLSQI HGNDFLSQYH 60 YHHLEQNKRE FNGAAPVVVS SRWNPTPEQL RALEELYRRG TRTPSAEQIQ HITAQLRRFG 120 NIEGKNVFYW FQNHKARERQ KRRRQMESDA ETPEKKDLAA SRTVFEVERT KNWTPSTNCS 180 TIAEESVSTQ RTAKAVAAES RTDGWLLLDE GELQQRRNVF ERNARWHVMQ LPCPSPSSAP 240 VTHLINTPPN ASVASSMATT TTTVTTRKMD PNLIKTHDLS FFISPQRENS AIYFSGSSST 300 SEEDNCVESQ TLQLFPLRSG DGISDNMKDN ETEISASAMN ANNLTPGQFF EFLPMKE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G101000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098409 | 0.0 | BT098409.1 Soybean clone JCVI-FLGm-16H23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006583454.1 | 0.0 | WUSCHEL-related homeobox 1 | ||||
Refseq | XP_028239925.1 | 0.0 | WUSCHEL-related homeobox 1-like | ||||
TrEMBL | A0A0B2SHU4 | 0.0 | A0A0B2SHU4_GLYSO; WUSCHEL-related homeobox 1 | ||||
TrEMBL | K7L0T1 | 0.0 | K7L0T1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G11372.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2892 | 34 | 71 | Representative plant | OGRP8416 | 7 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 1e-52 | WUSCHEL related homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G101000.1.p |
Entrez Gene | 100819541 |