PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G073000.2.p
Common NameGLYMA_07G073000, LOC100788528
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 275aa    MW: 30982 Da    PI: 8.2978
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G073000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEde+lv+++++ Gg+ +W++ ++  g+ R++k+c++rw +yl
  Glyma.07G073000.2.p 14 KGSWTAEEDEILVNYINKNGGHgSWRSLPKLAGLLRCGKSCRLRWTNYL 62
                         799******************9***********99************97 PP
2Myb_DNA-binding48.81.6e-1568113148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T eE++l+++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
  Glyma.07G073000.2.p  68 RGSFTLEEEKLIIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 113
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-22565IPR009057Homeodomain-like
PROSITE profilePS5129415.67962IPR017930Myb domain
SuperFamilySSF466894.49E-2810109IPR009057Homeodomain-like
SMARTSM007175.3E-121364IPR001005SANT/Myb domain
PfamPF002491.4E-141462IPR001005SANT/Myb domain
CDDcd001677.51E-81662No hitNo description
PROSITE profilePS5129424.45163117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2566118IPR009057Homeodomain-like
SMARTSM007172.1E-1467115IPR001005SANT/Myb domain
PfamPF002491.8E-1468113IPR001005SANT/Myb domain
CDDcd001671.42E-970113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGRKPCCDKM GLKKGSWTAE EDEILVNYIN KNGGHGSWRS LPKLAGLLRC GKSCRLRWTN  60
YLRPDIKRGS FTLEEEKLII QLHGILGNRW AAIASQLPGR TDNEIKNLWN THLKKRLICM  120
GLDPQTHQPL ASPHNLNDKA HASSTSTRHM AQWETARLEA EARLSREPHF NNKTDSDYFL  180
RIWNSEVGES FRDVHKSESS IKCESLSATT TTTTTDLASS TPASIVKKEF LWGVKKIVSY  240
SSSSSSELEH DSCDTSLQFL LDFPINNDMS FLEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261211725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}.
UniprotTISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G073000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-100AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583311.10.0transcription factor MYB41
RefseqXP_025984958.10.0transcription factor MYB41
RefseqXP_028238596.10.0transcription factor MYB41-like
SwissprotQ9M2D91e-120MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A445JTN20.0A0A445JTN2_GLYSO; Transcription factor MYB41
TrEMBLI1KID30.0I1KID3_SOYBN; Uncharacterized protein
STRINGGLYMA07G07960.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-115myb domain protein 17