PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G055200.1.p
Common NameGLYMA_07G055200, LOC100807078
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 627aa    MW: 69023.2 Da    PI: 6.7948
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G055200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.2e-13460506455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Glyma.07G055200.1.p 460 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 506
                          799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.4E-5251242IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047456505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-18459519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.45E-15459510No hitNo description
Gene3DG3DSA:4.10.280.103.0E-17460518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10460506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-17462511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MKIEVGLGGV WDEEEKATVM EVLGRGAFDY LVANSVSNEN LLMAFGCGEN MQNKLSDLVE  60
RPNSSNFSWN YAIFWQISQS KYGDWVLGWG DGCCREPREG EEGGGEVRRV RVVFDDDDEK  120
VQRMRKGVLQ KLHMTFGGSD EDNYAFGLDR VTDTEMFFLA SMYFSFPRGL GGPGKCFASG  180
KHLWVSDVLK SSFDYCVRSF LAKSAGIQTV VLVPTDFGVV EMGSVRMVGE SFELLQAVKS  240
VFSAQASSLL VPHMVKPIAP LDLVREKRDG SESANALLSG LAIGDKNKNI NNNSRVEGIG  300
VPKIFGQDLN CVTQFREKLA VRKMEERPRP WGGHPPNVNS IGFPNGVQGS SWGAGQVVRH  360
LGPPEMLAPR LASSGTLPKL ANGARHDFVH NNFEQQRPVQ MQIDFSGATS RAASGRSIIA  420
ESEISDVEAT CKEERVSVAD DRRPRKRGRK PANGREEPLN HVEAERQRRE KLNQRFYALR  480
AVVPNISKMD KASLLGDAIA YINELQAKLK TIESERERFG STSMDGPELE ANARVENHHN  540
GTPDVDVQVA QDGVIVKVSC PIDVHPVSKV IQTFKDAEIG VVESKVTATN VSVFHTFVVK  600
SQGPDQLTKD KLIALFSKES STIKTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-30454536283Transcription factor MYC2
5gnj_B2e-30454536283Transcription factor MYC2
5gnj_E2e-30454536283Transcription factor MYC2
5gnj_F2e-30454536283Transcription factor MYC2
5gnj_G2e-30454536283Transcription factor MYC2
5gnj_I2e-30454536283Transcription factor MYC2
5gnj_M2e-30454536283Transcription factor MYC2
5gnj_N2e-30454536283Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1441449RRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.94790.0leaf| pod
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G055200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528790.10.0transcription factor bHLH13
RefseqXP_028239384.10.0transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A445JSS70.0A0A445JSS7_GLYSO; Transcription factor bHLH13
TrEMBLI1KHU70.0I1KHU7_SOYBN; Uncharacterized protein
STRINGGLYMA07G06090.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Representative plantOGRP25311123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-153bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]