PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G291900.1.p
Common NameGLYMA_06G291900, LOC100805461
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 225aa    MW: 25174.8 Da    PI: 6.663
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G291900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.5e-091865655
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                           +E++RR++++   ++L +llP+ +   p++ l   + + +A++YIksL+
  Glyma.06G291900.1.p 18 RLVEKNRRNQMKILCNKLNSLLPSyN---PKEALPLPDQVDEAINYIKSLE 65
                         679*********************66...9999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.9E-111079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.36E-51069No hitNo description
PROSITE profilePS5088811.3181264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-101580IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-61865IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDQLGIIQPS SSTKVERRLV EKNRRNQMKI LCNKLNSLLP SYNPKEALPL PDQVDEAINY  60
IKSLEAKVKM AQEKKECLQG IRKRSRDCFS NNSTNFAATS AGFPKSPQLE IHEVGSSLQV  120
VLTCGLDHQF IFSEIIRMLH EENIDVRSAN SSLAGDSMLH VVHAEIPQSL LQFGATKVSQ  180
RLKRFVNGSC SDVETQPELW DFEIGTDDMW GLYILQGCIL PNVV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G291900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003526277.11e-167transcription factor bHLH162
RefseqXP_028234346.11e-167transcription factor bHLH162-like
TrEMBLA0A445KFL11e-166A0A445KFL1_GLYSO; Transcription factor bHLH162
TrEMBLK7KY291e-166K7KY29_SOYBN; Uncharacterized protein
STRINGGLYMA06G44660.21e-166(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-32bHLH family protein