PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G290000.1.p
Common NameGLYMA_06G290000, Glyma06g44430.1, LOC100801924
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 209aa    MW: 23426.4 Da    PI: 10.4682
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G290000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-202372255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +++GVr ++ +gr++AeIrdp   gk++r++lg+f+tae+Aa+a++aa+++++g
  Glyma.06G290000.1.p 23 HFRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEDAARAYDAAARNFRG 72
                         69*******.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-222381IPR016177DNA-binding domain
SMARTSM003809.6E-402386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-332380IPR001471AP2/ERF domain
PfamPF008478.2E-142372IPR001471AP2/ERF domain
PROSITE profilePS5103223.6042380IPR001471AP2/ERF domain
CDDcd000186.62E-192381No hitNo description
PRINTSPR003675.5E-112435IPR001471AP2/ERF domain
PRINTSPR003675.5E-114662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVKEKKNVVV KNKKPNNNAD ELHFRGVRKR PWGRYAAEIR DPGKKTRVWL GTFDTAEDAA  60
RAYDAAARNF RGPKAKTNFP VPPDDNNNNN VNVNKNKSVN VKSHSPSQSS TVESATPERE  120
ATRRSTSAAI DRFPFLPIQQ QILMTHPVAA PMRPVFFLDR AHFMTQSFPL RFEPGPVQSD  180
SDSSSVVVDC QPKRELNLDL NLAPPNEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-222381261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-212381564ATERF1
3gcc_A1e-212381564ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.319300.0flower| hypocotyl| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G290000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310800.0KT031080.1 Glycine max clone HN_CCL_133 AP2-EREBP transcription factor (Glyma06g44430.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527423.11e-152ethylene-responsive transcription factor 9
RefseqXP_028238104.11e-152ethylene-responsive transcription factor 9-like
SwissprotQ9FE676e-47ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLA0A445KFI11e-151A0A445KFI1_GLYSO; Ethylene-responsive transcription factor 9
TrEMBLI1KEZ61e-151I1KEZ6_SOYBN; AP2-EREBP transcription factor
STRINGGLYMA06G44430.11e-152(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-36erf domain protein 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]
  3. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]