PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G242200.1.p | ||||||||
Common Name | GLYMA_06G242200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 213aa MW: 23295 Da PI: 8.1245 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.9 | 9.9e-34 | 51 | 109 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+ Glyma.06G242200.1.p 51 LDDGYCWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 109 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.4E-35 | 44 | 111 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-29 | 44 | 111 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.182 | 46 | 111 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-38 | 51 | 110 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.4E-26 | 52 | 109 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MINIVSRNEC RDDDAKNWIN SAYNLNISLV YIYAALEVAR FGCTLSEVDI LDDGYCWRKY 60 GQKVVRGNPN PRSYYKCTNA GCPVRKHVER ASHDPKAVIT TYEGKHNHDV PAARNSSHDM 120 AVPAVAAGGQ TRTKLEESDT ISLDLGMGIT SAAEHSSSNL KFVHTTSTPV YFGVLNNSSN 180 SYGSRDNRSD GPSLNRSSYP CPQSMGRILM GP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-37 | 44 | 112 | 10 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-37 | 44 | 112 | 10 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.6683 | 0.0 | hypocotyl| leaf| meristem| root| seed coat| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32493107 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G242200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY323128 | 0.0 | AY323128.1 Glycine max putative WRKY-type DNA binding protein (WRKY1) mRNA, complete cds. | |||
GenBank | EU019555 | 0.0 | EU019555.1 Glycine max WRKY7 (WRKY7) mRNA, complete cds. | |||
GenBank | EU375350 | 0.0 | EU375350.1 Glycine max transcription factor (WRKY3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006595624.1 | 1e-109 | WRKY transcription factor 7 isoform X1 | ||||
Refseq | XP_014622007.1 | 1e-110 | WRKY transcription factor 7 isoform X2 | ||||
Refseq | XP_028200587.1 | 1e-109 | probable WRKY transcription factor 20 isoform X1 | ||||
Refseq | XP_028200589.1 | 1e-110 | probable WRKY transcription factor 20 isoform X3 | ||||
Swissprot | Q93WV0 | 1e-59 | WRK20_ARATH; Probable WRKY transcription factor 20 | ||||
TrEMBL | A0A0R0JL93 | 1e-157 | A0A0R0JL93_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G37100.1 | 1e-118 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3946 | 34 | 63 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.1 | 1e-62 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G242200.1.p |