PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G195500.1.p
Common NameGLYMA_06G195500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 358aa    MW: 40199.4 Da    PI: 8.9706
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G195500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM183.16.9e-57181431128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL +kv+++++++ ++i evd++++ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat+sgyWkatgkdk
  Glyma.06G195500.1.p  18 LPPGFRFHPTDEELISHYLYRKVTDTNFSA-RAIGEVDLNRSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATESGYWKATGKDK 106
                          79**************************99.89***************888999************************************ PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e+++ +++lvg+kktLvfykgrapkgektdWvmheyrl
  Glyma.06G195500.1.p 107 EIFR-GKSLVGMKKTLVFYKGRAPKGEKTDWVMHEYRL 143
                          ****.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-6512168IPR003441NAC domain
PROSITE profilePS5100560.21518168IPR003441NAC domain
PfamPF023656.4E-3019143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MENVSVLLCN KEKDQMDLPP GFRFHPTDEE LISHYLYRKV TDTNFSARAI GEVDLNRSEP  60
WDLPWKAKMG EKEWYFFCVR DRKYPTGLRT NRATESGYWK ATGKDKEIFR GKSLVGMKKT  120
LVFYKGRAPK GEKTDWVMHE YRLDGKFSVH NLPKTAKNEW VICRVFQKSS GVKRTHISGM  180
MMLDSYGNEM VYSSSALPPL TDSSPSIGNN TKALSVTDSA YVPCFSNPID VPRGIFDSLN  240
NINISINSNT LYGVSSNHSF YNTQGVQLQA PPTLPLPSSS NHYLRAFLEN QGNGSNMSNN  300
GFEPEREMVS VSQKTSLSTD VKAEISSLGK RHFENQNNPI ASAAAVAPMD LATLWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-551517414171NO APICAL MERISTEM PROTEIN
1ut4_B1e-551517414171NO APICAL MERISTEM PROTEIN
1ut7_A1e-551517414171NO APICAL MERISTEM PROTEIN
1ut7_B1e-551517414171NO APICAL MERISTEM PROTEIN
3swm_A1e-551517417174NAC domain-containing protein 19
3swm_B1e-551517417174NAC domain-containing protein 19
3swm_C1e-551517417174NAC domain-containing protein 19
3swm_D1e-551517417174NAC domain-containing protein 19
3swp_A1e-551517417174NAC domain-containing protein 19
3swp_B1e-551517417174NAC domain-containing protein 19
3swp_C1e-551517417174NAC domain-containing protein 19
3swp_D1e-551517417174NAC domain-containing protein 19
4dul_A1e-551517414171NAC domain-containing protein 19
4dul_B1e-551517414171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.268580.0seed coat
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G195500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0287730.0DQ028773.1 Glycine max NAC domain protein NAC5 (NAC5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235899.20.0NAC domain protein NAC5
RefseqXP_028237267.10.0NAC domain-containing protein 100-like
SwissprotQ9FLJ21e-138NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0B2QXJ60.0A0A0B2QXJ6_GLYSO; NAC domain-containing protein 100
TrEMBLA0A0R0JV750.0A0A0R0JV75_SOYBN; Uncharacterized protein
STRINGGLYMA06G21020.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-136NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]