PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.06G194300.1.p

Common Name

GLYMA_06G194300

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 269aa MW: 31469.4 Da PI: 5.9386

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G194300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.9	1.3e-25	135	184	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k +s ++s+yF++pi +AA+eL+v+lT LK++CR++GI+RWPhRk+ sl Glyma.06G194300.1.p 135 KMLSRTTVSQYFYMPISKAARELNVGLTHLKKRCRELGIQRWPHRKLMSL 184 789999*****************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.416	117	205	IPR003035	RWP-RK domain
Pfam	PF02042	6.4E-21	137	184	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MENQQLTFWK SNYDIDDYYP FAPTSQFSSY DYCGWGSAAD GYHWPHEFPL QDSYLDAIPF 60 MKFYYPHDIL YETTLPIEPT SLSIQDYDFS DWNEIDGSDH KPVFSSCNDG ESVSEMKEDL 120 NAKKCREEKI SSSAKMLSRT TVSQYFYMPI SKAARELNVG LTHLKKRCRE LGIQRWPHRK 180 LMSLQTLIKN IQEQGEAEGH ENDEKLRAAI EMLKREKRKV EEMPDLELED NTRRLRQACF 240 KANYKKRKLV GMRFIEPESS LSGLSNKY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G194300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028236548.1	0.0	protein RKD1-like
TrEMBL	K7KVZ1	0.0	K7KVZ1_SOYBN; Uncharacterized protein
STRING	GLYMA06G20881.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6184	30	52
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	2e-56	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Glyma.06G194300.1.p