PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G188100.1.p
Common NameGLYMA_06G188100, LOC100777819
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 270aa    MW: 28911.2 Da    PI: 6.5131
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G188100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.9e-11149196455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Glyma.06G188100.1.p 149 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 196
                          8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-18143215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.14E-11143200No hitNo description
PROSITE profilePS5088815.828145195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-18145216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-8149196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDPPLITDST FSPAYSLAEI WPGMPHFPPP FPHPSSADHS TLTDLTATPR KRKDCSSSSS  60
SASAADEDDC SKVLSSTTTA TANLSNNDSG SNKQMKLGGS SVENDGFKAE AEASSAGGNK  120
SSEQSNKPCE APKQDYIHVR ARRGQATDSH SLAERARREK ISERMKILQD LVPGCNKVIG  180
KALVLDEIIN YIQSLQRQVE FLSMKLEAVN SRMNMNPTID GFPSKDVGTQ PFDIAGMVFG  240
SQAARGYAQG SSPPGWLHMQ IGGGFERTT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.226010.0hypocotyl| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G188100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0908470.0BT090847.1 Soybean clone JCVI-FLGm-5B17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527048.10.0transcription factor bHLH79
SwissprotQ84T085e-79BH089_ORYSJ; Transcription factor BHLH089
TrEMBLI1KCM50.0I1KCM5_SOYBN; Uncharacterized protein
STRINGGLYMA06G20000.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-74BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]