PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.06G154400.2.p

Common Name

GLYMA_06G154400, LOC100815777

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 177aa MW: 20517.9 Da PI: 4.5429

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G154400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	22.2	3.8e-07	8	31	1	24
NAM 1 lppGfrFhPtdeelvveyLkkkve 24 lppGf F+Ptdeelvv++L k+ Glyma.06G154400.2.p 8 LPPGFLFSPTDEELVVHFLYCKAL 31 79*****************99865 PP
2	NAM	65.4	1.6e-20	36	99	57	128
NAM 57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++yfF+k ++nr+t++gyWk tg +k++ls+ +++vg+kk Lvf+ g+ap+g++t+Wvm+ey++ Glyma.06G154400.2.p 36 QYYFFTK--------VNENRTTENGYWKDTGVTKPILSTFDKEVGMKKYLVFHIGEAPQGTETSWVMQEYHI 99 4555554........45799*****************99***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	25.214	1	133	IPR003441	NAC domain
SuperFamily	SSF101941	3.66E-32	5	132	IPR003441	NAC domain
Pfam	PF02365	7.8E-21	9	99	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MEDESINLPP GFLFSPTDEE LVVHFLYCKA LLSGNQYYFF TKVNENRTTE NGYWKDTGVT 60 KPILSTFDKE VGMKKYLVFH IGEAPQGTET SWVMQEYHIC SSEFDTASYR SVRRRRKHDQ 120 SWSKCVLCRV YEKIRSQQSV DCYRDDDDDG SGSELSWLDE VYLSLDDDLK EIGMPI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-24	6	138	15	170	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-24	6	138	15	170	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-24	6	138	15	170	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-24	6	138	15	170	NO APICAL MERISTEM PROTEIN
3swm_A	3e-24	6	138	18	173	NAC domain-containing protein 19
3swm_B	3e-24	6	138	18	173	NAC domain-containing protein 19
3swm_C	3e-24	6	138	18	173	NAC domain-containing protein 19
3swm_D	3e-24	6	138	18	173	NAC domain-containing protein 19
3swp_A	3e-24	6	138	18	173	NAC domain-containing protein 19
3swp_B	3e-24	6	138	18	173	NAC domain-containing protein 19
3swp_C	3e-24	6	138	18	173	NAC domain-containing protein 19
3swp_D	3e-24	6	138	18	173	NAC domain-containing protein 19
4dul_A	3e-24	6	138	15	170	NAC domain-containing protein 19
4dul_B	3e-24	6	138	15	170	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G154400.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU661917	0.0	EU661917.1 Glycine max NAC domain protein (NAC17) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014631959.1	1e-130	NAC domain-containing protein 104 isoform X2
Refseq	XP_028236442.1	1e-130	NAC domain-containing protein 104-like isoform X2
TrEMBL	A0A0R0JP43	1e-129	A0A0R0JP43_SOYBN; Uncharacterized protein
TrEMBL	A0A445KA68	1e-129	A0A445KA68_GLYSO; NAC domain-containing protein 104 isoform C
STRING	GLYMA06G15990.1	1e-123	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	4e-34	xylem NAC domain 1

Link Out ? help Back to Top
Phytozome	Glyma.06G154400.2.p
Entrez Gene	100815777