PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G142000.1.p
Common NameGLYMA_06G142000, LOC100778162
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 320aa    MW: 35953.6 Da    PI: 5.4398
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G142000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.12.1e-24139199259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          dD ++WrKYGqKe+ +s+fprsY+rCt +   gC+++k+v+r +e+p+  +itY g H+++
  Glyma.06G142000.1.p 139 DDNHAWRKYGQKEILNSQFPRSYFRCTRKfeqGCRATKQVQRIQENPDRYNITYIGFHTCK 199
                          8**************************98889***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-23128199IPR003657WRKY domain
SuperFamilySSF1182901.44E-23135199IPR003657WRKY domain
SMARTSM007743.4E-34138200IPR003657WRKY domain
PfamPF031064.0E-23139199IPR003657WRKY domain
PROSITE profilePS5081118.647139196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MSILFPRSSS AAKRKRVIRE LVQGRDYATQ LKFLLQKPIG PDGSVSAKEL VANVLRSFAE  60
TLSVLTSSSE DSTSGHDHDD EVIAQNLVIS GEDASQVASI NDPSSEDSTE SRKGSKDRRG  120
SYKRRKTEQT WTIVAQTTDD NHAWRKYGQK EILNSQFPRS YFRCTRKFEQ GCRATKQVQR  180
IQENPDRYNI TYIGFHTCKD TLKAPQVVTH SKTWDSFLGP ESNVPNEHYS TIGSQSQIVI  240
QEYPNDETDP SDLTDANLWS DLKDFELSND KPAGLKIAPE NADSVYSCTG SRSLDMDFGI  300
FSPHFCSTED FHFDESQLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-22132199269OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.99130.0leaf| root
Function -- GeneRIF ? help Back to Top
  1. two structurally related soybean WRKY proteins, GmWRKY58 and GmWRKY76, play a critical role in plant growth and flowering. [WRKY76]
    [PMID: 27335454]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G142000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0953010.0BT095301.1 Soybean clone JCVI-FLGm-7K5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001355645.10.0WRKY transcription factor 76
RefseqXP_028236287.10.0WRKY DNA-binding transcription factor 70-like
TrEMBLA0A0B2QVZ20.0A0A0B2QVZ2_GLYSO; Putative WRKY transcription factor 70
TrEMBLI1KB700.0I1KB70_SOYBN; Uncharacterized protein
STRINGGLYMA06G14720.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.15e-47WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Yang Y, et al.
    Functional analysis of structurally related soybean GmWRKY58 and GmWRKY76 in plant growth and development.
    J. Exp. Bot., 2016. 67(15): p. 4727-42
    [PMID:27335454]