PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G125100.1.p
Common NameGLYMA_06G125100, LOC100807598
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 354aa    MW: 39638.1 Da    PI: 4.5463
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G125100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-19100150155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  Glyma.06G125100.1.p 100 KKFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIRLRG 150
                          59********.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.11E-33100157No hitNo description
PROSITE profilePS5103223.591101158IPR001471AP2/ERF domain
PfamPF008471.0E-12101150IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-21101158IPR016177DNA-binding domain
SMARTSM003801.2E-37101164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-29101158IPR001471AP2/ERF domain
PRINTSPR003673.9E-10102113IPR001471AP2/ERF domain
PRINTSPR003673.9E-10124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEDSILCKHT VHHTVTKKLI SPKKSSQTNS TTERRIVRIS YTDPDATDSS SDEEGFPFVR  60
QRMKRYVNQI EIETAAAEKV VRKRPAGEAC RRPAKLHSGK KFRGVRQRPW GKWAAEIRDP  120
ARRVRLWLGT YDTAEEAAMV YDNAAIRLRG PDALTNFVTP PKRDSPSPSP PPAAAETPAE  180
VCEMKVVVTE EASGSGYDSS EDHCHHNLSS PTSVLQFRSN SSEENSESQQ KAEQVLRECE  240
GETETSLFEE TGEFLALDNM PLPAWDDVFN FETPEYPPLL FQEEENLNLL HQSQMLGETV  300
QFSSEEGFSD ESSIMLADSL IDFDRACPSP SSLCQVDDFF QDILFASDPL VLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2299157362ATERF1
3gcc_A3e-2299157362ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15964RQRMKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G125100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310780.0KT031078.1 Glycine max clone HN_CCL_184 AP2-EREBP transcription factor (Glyma04g41740.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527973.10.0pathogenesis-related genes transcriptional activator PTI6
RefseqXP_028236041.10.0pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A445K8P50.0A0A445K8P5_GLYSO; Ethylene-responsive transcription factor CRF4
TrEMBLK7KUQ70.0K7KUQ7_SOYBN; Uncharacterized protein
STRINGGLYMA06G13040.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-53cytokinin response factor 4