PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G110800.1.p
Common NameGLYMA_06G110800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 496aa    MW: 54280.8 Da    PI: 6.3151
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G110800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS331.31.8e-1011014891374
                 GRAS   1 lvelLlecAeavss..gdlelaqalLarlsel....aspdgdpmqRlaayfteALaarlarsvselykalppsetsekn........... 73 
                          lv+lL+++Aea+s   ++  la+ +L rl+el    a+p+g++m+Rlaayft AL+  l + +    +  +  +                
  Glyma.06G110800.1.p 101 LVHLLMAAAEALSGapKSRDLARVILVRLKELvsshAAPHGSTMERLAAYFTDALQGLLEGAGGAHNNNNKHHHHY--Itscgphhhhrd 188
                          68**********98556777*********9996666778899***************9987432222222111111..112333344445 PP

                 GRAS  74 ....sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..sk 155
                              + ++laa++l++++sP++kf+h+taNqaIleav++++rvHi+D+di++G+QW++L+qaLas + gpp  +lRiT++++  sg  s 
  Glyma.06G110800.1.p 189 dhhhQNDTLAAFQLLQDMSPYVKFGHFTANQAILEAVAHDRRVHIVDYDIMEGVQWASLIQALASNKTGPPgpHLRITALSRTGSGrrSI 278
                          678899999999****************************************************999776656*********88889999 PP

                 GRAS 156 eeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe 245
                           +++etg+rLa fA++lg pf+f+    +  e++++++L++ +gEal+ n++l+l +l  +  ++     ++L+  k l+P++v++ve+e
  Glyma.06G110800.1.p 279 ATVQETGRRLAAFAASLGQPFSFHHCRLEPDETFKPSSLKLVRGEALVFNCMLNLPHLSYRAPESV---ASFLSGAKALKPRLVTLVEEE 365
                          9************************9999****************************985554444...59******************* PP

                 GRAS 246 adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                          +    + F++rf+++l++ysa+fdslea++p + ++r+ vEr++lg++iv  +a  g+e     e+ ++W e+l++aGF+ vp+s  + +
  Glyma.06G110800.1.p 366 VASIVGGFVARFMDSLHHYSAVFDSLEAGFPMQGRARALVERVFLGPRIVGSLARMGEE-----EERGSWGEWLGAAGFRGVPMSFANHC 450
                          **********************************************************9.....88899********************* PP

                 GRAS 336 qaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                          qakll+  ++ dgyrvee  s+ lvl Wk+r+L+s+S W+
  Glyma.06G110800.1.p 451 QAKLLIGLFN-DGYRVEELgSNKLVLDWKSRRLLSASLWT 489
                          **********.******987999****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.69975469IPR005202Transcription factor GRAS
PfamPF035146.4E-99101489IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MDIDAIHNLD FSGYSTITNT TPSSDDDYGC NWNHWSPVVN WDAFTGAHDD FHQIIDSIMC  60
DGAAPEEDNL SPDDHVASNS PSVSITEEDD DAGDDSKGLR LVHLLMAAAE ALSGAPKSRD  120
LARVILVRLK ELVSSHAAPH GSTMERLAAY FTDALQGLLE GAGGAHNNNN KHHHHYITSC  180
GPHHHHRDDH HHQNDTLAAF QLLQDMSPYV KFGHFTANQA ILEAVAHDRR VHIVDYDIME  240
GVQWASLIQA LASNKTGPPG PHLRITALSR TGSGRRSIAT VQETGRRLAA FAASLGQPFS  300
FHHCRLEPDE TFKPSSLKLV RGEALVFNCM LNLPHLSYRA PESVASFLSG AKALKPRLVT  360
LVEEEVASIV GGFVARFMDS LHHYSAVFDS LEAGFPMQGR ARALVERVFL GPRIVGSLAR  420
MGEEEERGSW GEWLGAAGFR GVPMSFANHC QAKLLIGLFN DGYRVEELGS NKLVLDWKSR  480
RLLSASLWTS SSHSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-54874924381Protein SCARECROW
5b3h_D4e-54874924381Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots and leaves. {ECO:0000269|PubMed:15961668}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G110800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527930.20.0nodulation-signaling pathway 2 protein
RefseqXP_028235850.10.0nodulation-signaling pathway 2 protein-like
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A445K7Z10.0A0A445K7Z1_GLYSO; Nodulation-signaling pathway 2 protein
TrEMBLK7KUH00.0K7KUH0_SOYBN; Uncharacterized protein
STRINGGLYMA06G11610.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Representative plantOGRP68391319
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-139GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]